View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292-Insertion-2 (Length: 603)
Name: NF1292-Insertion-2
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292-Insertion-2 |
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| [»] chr6 (5 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 123 - 603
Target Start/End: Original strand, 6498498 - 6498976
Alignment:
| Q |
123 |
tatctttaagtaactaatatgtgttattcttgtatttaatatactcatgaagaaattcttgtttaccttaggtgtattttggtactttagtgtaatggta |
222 |
Q |
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| T |
6498498 |
tatctttaagtaactaatatatgttattcttgtatttaatatactcatgaagaaatacttgtttac-ttaggtgtattttggtactttagtgtaatggta |
6498596 |
T |
|
| Q |
223 |
agtgtgaggtgagttagaagtcctatattgtttgaataagtgaaaattgaacactttatatgtgagaagacacataaatccaatgctttaaggttttggc |
322 |
Q |
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| T |
6498597 |
agtgtgaggtgatttagaagtcctatattgtttgaataagtgaaaattgaacactttatatgtgagaagacacataaacccaatgctttaaggttttggc |
6498696 |
T |
|
| Q |
323 |
ttaaagtatgacgtctttctcacttatgtggttgctcttggatcaatgagggtgatcccctgagctccacttgtgattcaacatttaatctatacaacaa |
422 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6498697 |
ttaaggtatgacgtctttttcacttatgtggttgctcttggaccaatgagggtgatcccctgagctccacttgtgattcaacatttaatctatacaacaa |
6498796 |
T |
|
| Q |
423 |
gtaaattatgttccaaaggatgcgggatgatnnnnnnntcaaactactcaatctgcagttgtggtgatgtcgaatcaattagacatttcttactttcttg |
522 |
Q |
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| T |
6498797 |
gtaaattatgtttcaaaggatgcgggattataaaaaaatcaaactactcaatctgcagttgtggtgatgtcgaat-agttagacatttcttcctttctta |
6498895 |
T |
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| Q |
523 |
caatagtttcagggctctttggtctctagcccgagcttggattgaggcctctacggcggagccgaattctattgctgacca |
603 |
Q |
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| T |
6498896 |
caataatttcagggctctttgatctctagcctgagcttggattgaggcctctacggcggagccgaattctattgctcacca |
6498976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 6498412 - 6498510
Alignment:
| Q |
8 |
ttggcaacttaccaacaaatcttcctttgaaatcagttgattagttgaagctagtctgttattatttatttatgttgttcatgtattatctttaagtaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
6498412 |
ttggcaacttaccaacaaatcttcctttgaaatcagtttattagttgaagctagtctgttattatttttttatgttgttaatgtattatctttaagtaa |
6498510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 6460267 - 6460200
Alignment:
| Q |
8 |
ttggcaacttaccaacaaatcttcctttgaaatcagttgattagttgaagctagtctgttattatttat |
76 |
Q |
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| T |
6460267 |
ttggcaacttaccaacca-tcttcctttgaaatatgttgattagctgaagctagtttgttattatttat |
6460200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 6460186 - 6460121
Alignment:
| Q |
123 |
tatctttaagtaactaatatgtgttattctt---gtatttaatatactcatgaagaaattcttgtt |
185 |
Q |
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| T |
6460186 |
tatctttaagtaactaatatgtgttattcttgtagtatttcatatattcatgaataaattcttgtt |
6460121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 603
Target Start/End: Complemental strand, 22403710 - 22403625
Alignment:
| Q |
518 |
tcttgcaatagtttcagggctctttggtctctagcccgagcttggattgaggcctctacggcggagccgaattctattgctgacca |
603 |
Q |
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| T |
22403710 |
tcttgcatttgtttcagggctctatagtctttagtccgagcttggattggagtctctacagcggagccgaattgtatttctgacca |
22403625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 481 - 603
Target Start/End: Complemental strand, 45085314 - 45085192
Alignment:
| Q |
481 |
ttgtggtgatgtcgaatcaattagacatttcttactttcttgcaatagtttcagggctctttggtctctagcccgagcttggattgaggcctctacggcg |
580 |
Q |
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|||||| || || |||||| |||||||||| || || ||||||||| | |||||||||||||||||||||| |||||||||||||| || ||||||||| |
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| T |
45085314 |
ttgtggagacgttgaatcagttagacatttgttcctctcttgcaattgattcagggctctttggtctctagtccgagcttggattggggtctctacggca |
45085215 |
T |
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| Q |
581 |
gagccgaattctattgctgacca |
603 |
Q |
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| T |
45085214 |
gagccaaattctatttctgacca |
45085192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 1188693 - 1188610
Alignment:
| Q |
277 |
tttatatgtgagaagacacataaatccaatgctttaaggttttggcttaaagtatgacgtctttctcacttatgtggttgctct |
360 |
Q |
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|||||| |||||||||| |||||| || |||||||||||||||| | ||||| || ||||| ||||||||||||||||||||| |
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| T |
1188693 |
tttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtggcgtctctctcacttatgtggttgctct |
1188610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 603
Target Start/End: Original strand, 37943066 - 37943140
Alignment:
| Q |
528 |
gtttcagggctctttggtctctagcccgagcttggattgaggcctctacggcggagccgaattctattgctgacca |
603 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||| |
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| T |
37943066 |
gttttagggctctttggtctctagtccgagcttggattg-ggtttctacggcggagccgaattctattgatgacca |
37943140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 33773280 - 33773350
Alignment:
| Q |
268 |
attgaacactttatatgtgagaagacacataaatccaatgctttaaggttttggcttaaagtatgacgtct |
338 |
Q |
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| T |
33773280 |
attgaacgctttatatgtgagaggacccataaatctaatgttttaagattttgggttaaagtgtgaggtct |
33773350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 28855893 - 28855797
Alignment:
| Q |
222 |
aagtgtgaggtgagttagaagtcctatattgtttgaataagtgaaaattgaacactttatatgtgagaagacacataaatccaatgctttaaggttt |
318 |
Q |
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| T |
28855893 |
aagtgtgaggtgagttagaagtctgacattgcttggaaaagtgaaggttgagtactttataagtgacatgcctcataaatctaatgccttaaggttt |
28855797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 36572064 - 36572127
Alignment:
| Q |
269 |
ttgaacactttatatgtgagaagacacataaatccaatgctttaaggttttggcttaaagtatg |
332 |
Q |
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|||||||| ||||| || ||||||| |||||||||| ||| |||||||||||| ||| |||||| |
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| T |
36572064 |
ttgaacaccttataagtaagaagacccataaatccattgccttaaggttttgggttagagtatg |
36572127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 23630311 - 23630380
Alignment:
| Q |
231 |
gtgagttagaagtcctatattgtttgaataagtgaaaattgaacactttatatgtgagaagacacataaa |
300 |
Q |
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||||||||||||| ||| |||| || | |||||||| |||||||||||||| |||||| ||| |||||| |
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| T |
23630311 |
gtgagttagaagtactacattgcttacaaaagtgaaagttgaacactttataagtgagacgactcataaa |
23630380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 2336669 - 2336726
Alignment:
| Q |
269 |
ttgaacactttatatgtgagaagacacataaatccaatgctttaaggttttggcttaa |
326 |
Q |
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|||||||||||||| |||||| ||| ||||||| |||||| ||||| |||||| |||| |
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| T |
2336669 |
ttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaa |
2336726 |
T |
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Back To:
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