View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12920_high_1 (Length: 752)
Name: NF12920_high_1
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 703; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Original strand, 4116498 - 4117224
Alignment:
| Q |
18 |
tcaataatgtacattatcgtacaaaagaaaaacacttttgatcactaataatcttaccaaggttctaagtgaaatcgttttgagattaggatctatgtcg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116498 |
tcaataatgtacattatcgtacaaaagaaaaacacttatgatcactaataatcttaccaaggttctaagtgaaatcgttttgagattaggatctatgtcg |
4116597 |
T |
|
| Q |
118 |
aagattgttccatatgtggttttatcaaggtcgtttcgcaatgaagacctgtaaaatgtacacaacttagtttcatgagcttatatactagaatttcctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4116598 |
aagattgttccatatgtggttttatcaaggtcatttcgcaatgaagacctgtaaaatgtacacaacttagtttcatgagcttatagactagaatttcctg |
4116697 |
T |
|
| Q |
218 |
caatcaggaaaagcacacatgcgcgtattgaagggatgtcgaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccaga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116698 |
caatcaggaaaagcacacatgcgcgtattgaagtgatgtcgaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccaga |
4116797 |
T |
|
| Q |
318 |
tcgttatcaaatgatcgagattcataactacgtgacttccgaaaatcaaaatccctcgctatagtctataagtggttcaaactcaatctcattgaaaagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4116798 |
tcgttatcaaatgatcgagattcataactacgtgacttccgaaaatcaaaatccctcgctatagtctataagaggttcaaactcaatctcattgaaaagt |
4116897 |
T |
|
| Q |
418 |
gaaatttatgcaatgcaaattaaattagagaatgttataaataacctgctctggtcactgcacatcagacataaatatctatttgacgctctaaatattt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116898 |
gaaatttatgcaatgcaaattaaattagagaatgttataaataacctgctctggtcactgcacatcagacataaatatctatttgacgctctaaatattt |
4116997 |
T |
|
| Q |
518 |
ggaaagacactgctgtttgctctgtcaaatcctttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctaca |
617 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116998 |
ggaaagacactgctgtttcctctgtcaaatcctttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctaca |
4117097 |
T |
|
| Q |
618 |
tagtagttgaggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaa |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4117098 |
tagtagttgaggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaa |
4117197 |
T |
|
| Q |
718 |
ttggaaaatgattatcattgatgatgt |
744 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4117198 |
ttggaaaatgattatcattgatgatgt |
4117224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 4136435 - 4136561
Alignment:
| Q |
72 |
taccaaggttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcgtttcgcaatgaagacctgtaa |
171 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||| ||||| ||||| ||| |||||| |||||| |||| ||| | |||||||||||||||||| |
|
|
| T |
4136435 |
taccaagcttctaagtgaaattgttttgagattgggatcaatgtcaaagatagttgcatatgaggttttttcaacgtcctcccgcaatgaagacctgtaa |
4136534 |
T |
|
| Q |
172 |
aatgtacacaacttagtttcatgagct |
198 |
Q |
| |
|
| | | || |||||| ||||||||||| |
|
|
| T |
4136535 |
attttgcaaaacttaatttcatgagct |
4136561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 550 - 710
Target Start/End: Original strand, 4136891 - 4137048
Alignment:
| Q |
550 |
tttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatctt |
649 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||| ||||| |||||||||||| ||||| |||| ||| |||||||||||||||||| || || |
|
|
| T |
4136891 |
tttgatgctaaagcttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---tt |
4136987 |
T |
|
| Q |
650 |
ctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaa |
710 |
Q |
| |
|
||| | | ||| |||||| ||| | |||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
4136988 |
ctagcaactcagcactttgtagattgggtagctcaaacaagacttccacatcagccttaaa |
4137048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 707
Target Start/End: Original strand, 4141803 - 4141951
Alignment:
| Q |
556 |
gctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaacc |
655 |
Q |
| |
|
||||||||| ||||||||| || ||||| |||| || ||||||||| ||||| |||| ||| |||||||||||||||||| || ||||| | |
|
|
| T |
4141803 |
gctaaagcttgcaaaccaaatggccctatcatgccttttattgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---ttctagca |
4141899 |
T |
|
| Q |
656 |
agtcaccactttctagctcaggtagctcaaacaacacttctacatcaacctt |
707 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
4141900 |
cctcagcactttctagatcaggtagctcaaacaagacttccacatcagcctt |
4141951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University