View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_high_11 (Length: 349)
Name: NF12920_high_11
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 346
Target Start/End: Original strand, 32644882 - 32645219
Alignment:
| Q |
6 |
aggagcacagacaagcaacgatgatcatgcaaagaggattaaaagctgttgcaaaaactgggcctctcatttgcatcaccagcccttgaacatagtatgc |
105 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32644882 |
aggagcccaaacaagcaacgatgatcatgcaaagaggattaaaagctgttgcaaaaactgggcctctcatttgcatcaccagcccttgaacatagtatgc |
32644981 |
T |
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| Q |
106 |
aattcctgaactaactattccctatataataaattaagaaactgattaagaaaattatttgaannnnnnnctaactaagcttgtgaatgagaaactaatt |
205 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32644982 |
aattcctgaactaactattccctatataa---attaagaaactgattaagaaaattatttgaatttttttctaactaagcttgtgaatgagaaactaatt |
32645078 |
T |
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| Q |
206 |
aacggattaacaaaccgtgtaaagaggagcatagagcctataatcccagccaatggcccaagcatttgaatgacgttcggccacaagtgccaccgcagtt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32645079 |
aacggattaacaaaccgtgtaaagaggagcatagagcctataatcccagccaatggcccaagcatgtgaatgacgttcggccacaagtgccaccgcagtt |
32645178 |
T |
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| Q |
306 |
gcttgtgctcctcccacgaaacatatcaaggttgccaatga |
346 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32645179 |
gcttgtgctcctcccgcgagacatatcaaggttgccaatga |
32645219 |
T |
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