View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12920_high_17 (Length: 279)

Name: NF12920_high_17
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12920_high_17
NF12920_high_17
[»] chr5 (7 HSPs)
chr5 (1-262)||(41079716-41079977)
chr5 (6-104)||(41101335-41101432)
chr5 (218-258)||(28094142-28094182)
chr5 (83-114)||(41091088-41091119)
chr5 (213-254)||(11744227-11744268)
chr5 (217-262)||(22088113-22088158)
chr5 (212-252)||(4248037-4248077)
[»] chr7 (4 HSPs)
chr7 (159-252)||(25296815-25296909)
chr7 (205-262)||(28701321-28701378)
chr7 (226-262)||(24978720-24978756)
chr7 (226-262)||(35818655-35818691)
[»] chr3 (6 HSPs)
chr3 (217-262)||(35696477-35696522)
chr3 (158-252)||(34199146-34199240)
chr3 (158-262)||(5404383-5404487)
chr3 (206-258)||(28562134-28562185)
chr3 (193-249)||(35936425-35936482)
chr3 (234-262)||(32324674-32324702)
[»] chr4 (6 HSPs)
chr4 (216-262)||(4299371-4299417)
chr4 (150-246)||(31380371-31380467)
chr4 (212-251)||(14949659-14949698)
chr4 (225-260)||(32379032-32379067)
chr4 (197-253)||(4935973-4936028)
chr4 (190-254)||(5950076-5950140)
[»] chr8 (4 HSPs)
chr8 (170-262)||(13126331-13126424)
chr8 (219-262)||(13264391-13264434)
chr8 (219-252)||(13350228-13350261)
chr8 (217-249)||(19165556-19165588)
[»] chr6 (2 HSPs)
chr6 (218-262)||(6614400-6614444)
chr6 (206-246)||(7318703-7318743)
[»] chr1 (4 HSPs)
chr1 (214-258)||(41018988-41019032)
chr1 (232-262)||(1315383-1315413)
chr1 (211-252)||(8836786-8836827)
chr1 (216-252)||(32173032-32173068)
[»] scaffold1308 (1 HSPs)
scaffold1308 (209-260)||(119-170)
[»] chr2 (3 HSPs)
chr2 (209-260)||(25103366-25103417)
chr2 (57-123)||(6914685-6914750)
chr2 (226-260)||(21785175-21785209)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 41079716 - 41079977
Alignment:
Q  1 atgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatctttaaaggtatcattaaaatttaaatttgaatattttgttagagtattttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41079716 atgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatccttaaaggtatcattaagatttaaatttgaatattttgttagagtattttta 41079815  T
Q  101 ggatttgttagtttgtttcttatttaactttgtgttaaccctccggttagccatgatgtaagtaaagtctgaccaagaactgttccacgcaggaatcaaa 200  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079816 ggatttgttagtttgtttcttatttaattttgtgttaactctccggttagccatgatgtaagtaaagtctgaccaagaactgttccacgcaggaatcaaa 41079915  T
Q  201 ttttgttcttttgaacgattcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41079916 ttttgttcttttgaacgattcgtcttttgatggagctcattaaccacttgagtccaatcact 41079977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 41101335 - 41101432
Alignment:
Q  6 tgtgtaaaaacgtttcacatggtcggtgtatataaattaaatctttaaaggtatcattaaaatttaaatttgaatattttgttagagtatttttaggat 104  Q
    |||||||||| ||||||||  |||  ||||||| |||||||||  ||||| ||||||||| ||||||||||||||| |||||||| |||||| ||||||    
T  41101335 tgtgtaaaaatgtttcacaccgtcaatgtatatgaattaaatccctaaagatatcattaagatttaaatttgaata-tttgttagtgtatttataggat 41101432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 28094182 - 28094142
Alignment:
Q  218 attcgtcttttggtggagctcattaaccacttgagtccaat 258  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  28094182 attcgtcatttggtggagctcattaaccacttgagcccaat 28094142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 41091088 - 41091119
Alignment:
Q  83 tttgttagagtatttttaggatttgttagttt 114  Q
    ||||||||||||||||||||||||||||||||    
T  41091088 tttgttagagtatttttaggatttgttagttt 41091119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 11744227 - 11744268
Alignment:
Q  213 gaacgattcgtcttttggtggagctcattaaccacttgagtc 254  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  11744227 gaacgatttgtcctttggtggaactcattaaccacttgagtc 11744268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 22088158 - 22088113
Alignment:
Q  217 gattcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    |||| ||| ||||| ||||||||||||||||||||||| |||||||    
T  22088158 gatttgtcctttgggggagctcattaaccacttgagtctaatcact 22088113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 4248077 - 4248037
Alignment:
Q  212 tgaacgattcgtcttttggtggagctcattaaccacttgag 252  Q
    ||||| |||| |||||| |||||||||||||||||||||||    
T  4248077 tgaacaattcatcttttagtggagctcattaaccacttgag 4248037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 25296815 - 25296909
Alignment:
Q  159 taagtaaagtctgaccaagaactgttccacgcaggaatcaaatttt-gttcttttgaacgattcgtcttttggtggagctcattaaccacttgag 252  Q
    |||||| |||||| ||||||| ||||||||  |||||||||| |   |||||  ||||||||||||| |||||||||||||||||||||||||||    
T  25296815 taagtatagtctggccaagaattgttccaccgaggaatcaaactcaagttctcctgaacgattcgtcctttggtggagctcattaaccacttgag 25296909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 28701321 - 28701378
Alignment:
Q  205 gttcttttgaacgattcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    ||||| |||||||||||||| ||  |||||||| |||||||| ||||| |||||||||    
T  28701321 gttctgttgaacgattcgtccttatgtggagcttattaaccatttgagcccaatcact 28701378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 24978756 - 24978720
Alignment:
Q  226 tttggtggagctcattaaccacttgagtccaatcact 262  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  24978756 tttggtggaactcattaaccacttgagcccaatcact 24978720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 35818655 - 35818691
Alignment:
Q  226 tttggtggagctcattaaccacttgagtccaatcact 262  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  35818655 tttggtggaactcattaaccacttgagttcaatcact 35818691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 35696522 - 35696477
Alignment:
Q  217 gattcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  35696522 gattcgtcttttggtggagctcattaaccacttgagcccaatcact 35696477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 34199146 - 34199240
Alignment:
Q  158 gtaagtaaagtctgaccaagaactgttccacgcaggaatcaaattttgttcttttgaacgattcgtcttttggtggagctcattaaccacttgag 252  Q
    |||||||||  ||| ||||||| |||||||| |||||||| |||   |||||    ||||||||||| ||||||||||||||||||| |||||||    
T  34199146 gtaagtaaatcctggccaagaattgttccacacaggaatcgaatcgagttctcccaaacgattcgtcctttggtggagctcattaactacttgag 34199240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 5404487 - 5404383
Alignment:
Q  158 gtaagtaaagtctgaccaagaactgttccacgcaggaatcaaatttt-gttcttttgaacgattcgtcttttggtggagctcattaaccacttgagtcca 256  Q
    |||||||||||||| |||| || ||||||   ||||||||||| ||  |||||| ||||| ||||||| |  || ||||||||||||||||||||| |||    
T  5404487 gtaagtaaagtctggccaataattgttcccatcaggaatcaaacttgagttcttctgaactattcgtcata-ggaggagctcattaaccacttgagccca 5404389  T
Q  257 atcact 262  Q
    ||||||    
T  5404388 atcact 5404383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 28562134 - 28562185
Alignment:
Q  206 ttcttttgaacgattcgtcttttggtggagctcattaaccacttgagtccaat 258  Q
    ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||    
T  28562134 ttcttatgaacaattcgtcatt-ggtggagctcattaaccacttgagtccaat 28562185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 35936482 - 35936425
Alignment:
Q  193 gaatcaaattttgttctttt-gaacgattcgtcttttggtggagctcattaaccactt 249  Q
    ||||||||||| | | |||| |||||||||||| ||||||||| ||||||||||||||    
T  35936482 gaatcaaatttagattttttcgaacgattcgtcatttggtggaactcattaaccactt 35936425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 32324674 - 32324702
Alignment:
Q  234 agctcattaaccacttgagtccaatcact 262  Q
    |||||||||||||||||||||||||||||    
T  32324674 agctcattaaccacttgagtccaatcact 32324702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 4299417 - 4299371
Alignment:
Q  216 cgattcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  4299417 cgattcgtcctttggtgaagctcattaaccacttgagcccaatcact 4299371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 31380371 - 31380467
Alignment:
Q  150 gccatgatgtaagtaaagtctgaccaagaactgttccacgcaggaatcaaattttgttcttttgaacgattcgtcttttggtggagctcattaacca 246  Q
    ||||||| ||||||| || || || ||||| |||| ||| ||||||||||| |  ||||   ||||| ||||||| |||||||||||||||||||||    
T  31380371 gccatgaggtaagtatagcctaacaaagaattgtttcactcaggaatcaaactcagttcacctgaacaattcgtcctttggtggagctcattaacca 31380467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 14949659 - 14949698
Alignment:
Q  212 tgaacgattcgtcttttggtggagctcattaaccacttga 251  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  14949659 tgaacgattcgtcttttgatagagctcattaaccacttga 14949698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 32379032 - 32379067
Alignment:
Q  225 ttttggtggagctcattaaccacttgagtccaatca 260  Q
    ||||||||||||||||||||||||||||| ||||||    
T  32379032 ttttggtggagctcattaaccacttgagtacaatca 32379067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 4935973 - 4936028
Alignment:
Q  197 caaattttgttcttttgaacgattcgtcttttggtggagctcattaaccacttgagt 253  Q
    |||||| ||||||| ||||| |||||| |||| |||||| |||||||||||||||||    
T  4935973 caaattatgttcttctgaaccattcgt-ttttagtggagttcattaaccacttgagt 4936028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 5950076 - 5950140
Alignment:
Q  190 caggaatcaaattttgttcttttgaacgattcgtcttttggtggagctcattaaccacttgagtc 254  Q
    |||||||| ||| | |||||| |||||||||| || |||| || | |||||||||||||||||||    
T  5950076 caggaatcgaatctggttcttctgaacgattcttcatttgatgaatctcattaaccacttgagtc 5950140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 13126331 - 13126424
Alignment:
Q  170 tgaccaagaactgttccacgcaggaatcaaattttg-ttcttttgaacgattcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    ||||||| || |||||| | |||||||||||||| | |||| | ||||||| |||| ||||||| | |||||||||||||||||  ||||||||    
T  13126331 tgaccaaaaattgttccgcacaggaatcaaatttgggttctctcgaacgatacgtcctttggtgaaactcattaaccacttgagctcaatcact 13126424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 13264391 - 13264434
Alignment:
Q  219 ttcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||    
T  13264391 ttcgtcttttgttggagctcattaatcacttgagtctaatcact 13264434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 13350261 - 13350228
Alignment:
Q  219 ttcgtcttttggtggagctcattaaccacttgag 252  Q
    ||||||||||||||||| ||||||||||||||||    
T  13350261 ttcgtcttttggtggagttcattaaccacttgag 13350228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 19165556 - 19165588
Alignment:
Q  217 gattcgtcttttggtggagctcattaaccactt 249  Q
    ||||||||||||||||||||||||||| |||||    
T  19165556 gattcgtcttttggtggagctcattaatcactt 19165588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 6614444 - 6614400
Alignment:
Q  218 attcgtcttttggtggagctcattaaccacttgagtccaatcact 262  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||    
T  6614444 attcatcttttggtggagctaattaaccacctgagtccaatcact 6614400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 7318743 - 7318703
Alignment:
Q  206 ttcttttgaacgattcgtcttttggtggagctcattaacca 246  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  7318743 ttcttctgaacgattcgtgttttggtggagttcattaacca 7318703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 41018988 - 41019032
Alignment:
Q  214 aacgattcgtcttttggtggagctcattaaccacttgagtccaat 258  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||    
T  41018988 aacgattcgtcttttagtggaactcattaaccacttgagaccaat 41019032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 262
Target Start/End: Complemental strand, 1315413 - 1315383
Alignment:
Q  232 ggagctcattaaccacttgagtccaatcact 262  Q
    |||||||||||||||||||||||||||||||    
T  1315413 ggagctcattaaccacttgagtccaatcact 1315383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 8836786 - 8836827
Alignment:
Q  211 ttgaacgattcgtcttttggtggagctcattaaccacttgag 252  Q
    |||||||||||||| ||||||  |||||||||||||||||||    
T  8836786 ttgaacgattcgtcatttggtttagctcattaaccacttgag 8836827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 32173032 - 32173068
Alignment:
Q  216 cgattcgtcttttggtggagctcattaaccacttgag 252  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  32173032 cgattcgtcctttggcggagctcattaaccacttgag 32173068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1308 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 170 - 119
Alignment:
Q  209 ttttgaacgattcgtcttttggtggagctcattaaccacttgagtccaatca 260  Q
    ||||||||||||||||| |||||| | ||||||||| |||||||| ||||||    
T  170 ttttgaacgattcgtctgttggtgaaactcattaactacttgagttcaatca 119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 25103366 - 25103417
Alignment:
Q  209 ttttgaacgattcgtcttttggtggagctcattaaccacttgagtccaatca 260  Q
    ||||||||||||||||| |||||| | ||||||||| |||||||| ||||||    
T  25103366 ttttgaacgattcgtctgttggtgaaactcattaactacttgagttcaatca 25103417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 6914685 - 6914750
Alignment:
Q  57 tatcattaaaatttaaatttgaatattttgttagagtatttttaggatttgttagtttgtttcttat 123  Q
    |||||||| |||||||||||||||| ||||||  ||| ||||||  ||||||||||||||| |||||    
T  6914685 tatcattagaatttaaatttgaata-tttgttgaagtgtttttacaatttgttagtttgttccttat 6914750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 21785209 - 21785175
Alignment:
Q  226 tttggtggagctcattaaccacttgagtccaatca 260  Q
    ||||||||||||||||||||||||||| |||||||    
T  21785209 tttggtggagctcattaaccacttgagcccaatca 21785175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University