View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_high_18 (Length: 254)
Name: NF12920_high_18
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 48364407 - 48364182
Alignment:
| Q |
11 |
cagagagcatctgtagaacatattgatgaaagatcgattcttgaattcgatcaaagaaagatttgacatggaaatttgatgccaaaatcattagcaacaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48364407 |
cagacagcatctgtagaacatattgatgaaagatcgattcttgaattcgatcaaagaaagatttgacatggaaatttgatgccaaaatcattagcaacaa |
48364308 |
T |
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| Q |
111 |
tgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttacatcattcaaaaaccttgcggctaatttagatcgctggacctcg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48364307 |
tgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttacatcattcaaaaaccttgcggctaatttagatcgctggacctcg |
48364208 |
T |
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| Q |
211 |
tgattgataaaaagtacccatgtaag |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48364207 |
tgattgataaaaagtacccatgtaag |
48364182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 48384020 - 48383798
Alignment:
| Q |
11 |
cagagagcatctgtagaacatattgatgaaagatcgattcttgaattcgatcaaagaaagatttgacatggaaatttgatgccaaaatcattagcaacaa |
110 |
Q |
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||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| | |||||||||| |
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| T |
48384020 |
cagagagagtctgcagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctttagcaacaa |
48383921 |
T |
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| Q |
111 |
tgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttacatcattcaaaaaccttgcggctaatttagatcgctggacctcg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| ||| || | |
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| T |
48383920 |
tgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcgatgggcccca |
48383821 |
T |
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| Q |
211 |
tgattgataaaaagtacccatgt |
233 |
Q |
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| T |
48383820 |
cgattgattaaaagcacccatgt |
48383798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 48398121 - 48398316
Alignment:
| Q |
11 |
cagagagcatctgtagaacatattgatgaaagatcgattcttgaattcgatcaaagaaagatttgacatggaaatttgatgccaaaatcattagcaacaa |
110 |
Q |
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||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
48398121 |
cagagagagtctgcagaacatattgatggaagatcgattcttgaattcgatcaaagaaagatttgacatggaaactcgatgccaaaatctttagcaacaa |
48398220 |
T |
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| Q |
111 |
tgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttacatcattcaaaaaccttgcggctaatttagatcgctggac |
206 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| | | | ||| ||||||||||||||||| |
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| T |
48398221 |
tgtctttatgacccacaaaaatgttccaatgagaagggaaacaagagtccatgttacaccatccaaaatcttcgtggccaatttagatcgctggac |
48398316 |
T |
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