View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12920_high_21 (Length: 236)

Name: NF12920_high_21
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12920_high_21
NF12920_high_21
[»] chr6 (5 HSPs)
chr6 (89-221)||(7004471-7004603)
chr6 (1-57)||(7004305-7004361)
chr6 (1-57)||(196093-196149)
chr6 (1-57)||(9405231-9405287)
chr6 (1-29)||(16419718-16419746)
[»] chr2 (4 HSPs)
chr2 (3-57)||(8198596-8198650)
chr2 (3-57)||(8203356-8203410)
chr2 (1-57)||(4558860-4558916)
chr2 (3-43)||(42054150-42054190)
[»] chr4 (2 HSPs)
chr4 (3-44)||(2323392-2323433)
chr4 (3-42)||(34717516-34717554)
[»] chr5 (2 HSPs)
chr5 (3-57)||(1629795-1629849)
chr5 (3-40)||(38031775-38031812)
[»] chr1 (1 HSPs)
chr1 (2-39)||(29954873-29954910)
[»] scaffold0252 (1 HSPs)
scaffold0252 (2-42)||(9796-9836)
[»] chr3 (1 HSPs)
chr3 (5-57)||(29756200-29756252)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 7004471 - 7004603
Alignment:
Q  89 tgtatcacattcattttagttccttttcatacatgctatgctgtcttcctttcctttacaacaagtgtttaactacttccaaaattggatagttgtaaaa 188  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7004471 tgtatcacattcatcttacttccttttcatacatgatatgctgtcttcctttcctttacaacaagtgtttaactacttccaaaattggatagttgtaaaa 7004570  T
Q  189 tagtgtaatctttgttttttgttatgagagaat 221  Q
    |||||||||||||||||||||||||||||||||    
T  7004571 tagtgtaatctttgttttttgttatgagagaat 7004603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7004305 - 7004361
Alignment:
Q  1 tcaaattgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7004305 tcaaattgttacggttaaataacttaaagaacctaattggtacagagaaaacataaa 7004361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 196149 - 196093
Alignment:
Q  1 tcaaattgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    |||||||||||||||||| |||||||||| ||||||||||||| || ||||| ||||    
T  196149 tcaaattgttacggttaagtaacttaaaggacctaattgatactgaaaaaacttaaa 196093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9405287 - 9405231
Alignment:
Q  1 tcaaattgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    |||||||||||||||||||||| |||||| || ||| |||||| || ||||| ||||    
T  9405287 tcaaattgttacggttaaataaattaaaggacttaagtgatacggaaaaaacttaaa 9405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16419746 - 16419718
Alignment:
Q  1 tcaaattgttacggttaaataacttaaag 29  Q
    |||||||||||||||||||||||||||||    
T  16419746 tcaaattgttacggttaaataacttaaag 16419718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 8198596 - 8198650
Alignment:
Q  3 aaattgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    ||||||||||||||||||||||||||| ||||||||| ||| || ||||| ||||    
T  8198596 aaattgttacggttaaataacttaaaggacctaattggtacggaaaaaacttaaa 8198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 8203356 - 8203410
Alignment:
Q  3 aaattgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    ||||||||||||||||||||||||||| ||||||||| ||| || ||||| ||||    
T  8203356 aaattgttacggttaaataacttaaaggacctaattggtacggaaaaaacttaaa 8203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4558860 - 4558916
Alignment:
Q  1 tcaaattgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    |||||| |||||||||||||| ||||||| ||||||||| |||||| ||||| ||||    
T  4558860 tcaaatagttacggttaaatagcttaaaggacctaattggtacagacaaaacttaaa 4558916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 42054150 - 42054190
Alignment:
Q  3 aaattgttacggttaaataacttaaagaacctaattgatac 43  Q
    ||||||| ||||||||||||||||||| || ||||||||||    
T  42054150 aaattgtcacggttaaataacttaaaggacttaattgatac 42054190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 2323433 - 2323392
Alignment:
Q  3 aaattgttacggttaaataacttaaagaacctaattgataca 44  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  2323433 aaattgttacggttaaataacttaaagaacgtatttgataca 2323392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 34717516 - 34717554
Alignment:
Q  3 aaattgttacggttaaataacttaaagaacctaattgata 42  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  34717516 aaattgttacggttaaataacttaaag-acctaattgata 34717554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 1629849 - 1629795
Alignment:
Q  3 aaattgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    ||||||||||||||||||||||||||| || |||||| ||| || ||||| ||||    
T  1629849 aaattgttacggttaaataacttaaaggacttaattgctacggaaaaaacttaaa 1629795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 38031775 - 38031812
Alignment:
Q  3 aaattgttacggttaaataacttaaagaacctaattga 40  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  38031775 aaattgttacggttaaataaattaaataacctaattga 38031812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 29954910 - 29954873
Alignment:
Q  2 caaattgttacggttaaataacttaaagaacctaattg 39  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  29954910 caaattattacggttaaataacttaaaggacctaattg 29954873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9796 - 9836
Alignment:
Q  2 caaattgttacggttaaataacttaaagaacctaattgata 42  Q
    |||||||||| |||||||||| |||||| ||||||||||||    
T  9796 caaattgttatggttaaataatttaaaggacctaattgata 9836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 29756252 - 29756200
Alignment:
Q  5 attgttacggttaaataacttaaagaacctaattgatacagagaaaacataaa 57  Q
    ||||||||||||||||||||||||| |||| |||| ||| || ||||| ||||    
T  29756252 attgttacggttaaataacttaaaggaccttattggtacggaaaaaacttaaa 29756200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University