View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12920_high_5 (Length: 420)

Name: NF12920_high_5
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12920_high_5
NF12920_high_5
[»] chr6 (8 HSPs)
chr6 (1-194)||(2979849-2980045)
chr6 (70-287)||(2983801-2984009)
chr6 (192-318)||(2996414-2996540)
chr6 (319-396)||(2996309-2996386)
chr6 (113-195)||(2936984-2937065)
chr6 (114-192)||(2657344-2657422)
chr6 (251-291)||(2980097-2980137)
chr6 (54-108)||(2987327-2987383)
[»] chr4 (1 HSPs)
chr4 (238-293)||(38885775-38885830)
[»] scaffold0024 (3 HSPs)
scaffold0024 (125-186)||(33386-33447)
scaffold0024 (139-195)||(37176-37232)
scaffold0024 (54-108)||(42826-42880)
[»] chr7 (2 HSPs)
chr7 (54-114)||(3346351-3346411)
chr7 (58-115)||(3340545-3340602)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2979849 - 2980045
Alignment:
Q  1 tgttgaatattttctg---gtttaataattatttttggaagagatgtgctatatttttgttgaatgttttccggtattatcattggtttcaaaaaggttg 97  Q
    ||||||||||||||||   |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  2979849 tgttgaatattttctgcaggtttaacaattatttttggaagagatgtactatatttttgttgaatgttttccggtatcatcattggtttcgaaaaggttg 2979948  T
Q  98 aaaatcggttttcatgtaatatttcatacccaagaaagatataaaattattacaaccaattaattcatataaaccaacgaaccaaaattctccaata 194  Q
    |||| |||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  2979949 aaaaacggtttccgtgtaatattttatacccaagaaagatataaaaatattacaaccaattaattcatataagccaatgaaccaaaattctccaata 2980045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 70 - 287
Target Start/End: Original strand, 2983801 - 2984009
Alignment:
Q  70 ggtattatcattggtttcaaaaaggttgaaaatcggttttcatgtaatatttcatacccaagaaagatataaaattattacaaccaattaattcatataa 169  Q
    ||||||||| |||||||| ||||||||||||| |  ||| | |||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  2983801 ggtattatcgttggtttcgaaaaggttgaaaaacaatttccgtgtaatattttatacccatgaaagatataaaaatattacaaccaattaattcatataa 2983900  T
Q  170 accaacgaaccaaaattctccaatacagtaatacttttgaagcattgataattaagtagaggagtaaaaggtgcagcaaacctaggctcataagcaaaac 269  Q
    ||||||||||||||||||||||| |         |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||     
T  2983901 accaacgaaccaaaattctccaaca---------ttttgaagaattgataattaagtagaggagtaacaggtgtagcaaacctaggctcataagcaaaat 2983991  T
Q  270 catgcaactcaaacccat 287  Q
    ||||||||||||||||||    
T  2983992 catgcaactcaaacccat 2984009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 2996540 - 2996414
Alignment:
Q  192 atacagtaatacttttgaagcattgataattaagtagaggagtaaaaggtgcagcaaacctaggctcataagcaaaaccatgcaactcaaacccatcata 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2996540 atacagtaatacttttgaagcattgataattaagtagaggagtaaaaggttcagcaaacctaggctcataagcaagaccatgcaactcaaacccatcata 2996441  T
Q  292 acaaaaatatagtgcagctgcgtgtat 318  Q
    || ||| || | ||||  |||||||||    
T  2996440 accaaagtagaatgcaagtgcgtgtat 2996414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 2996386 - 2996309
Alignment:
Q  319 ggttggtggtggtagttttttggagttttcaagaaggcgtctctttatgaaatctttcatctccttttgccttggtgg 396  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  2996386 ggttggtggtggtagttttttagagttttcaagaaggcgtctctttatggaatctttcgtctccttttgcctttgtgg 2996309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 2936984 - 2937065
Alignment:
Q  113 gtaatatttcatacccaagaaagatataaaattattacaaccaattaattcatataaaccaacgaaccaaaattctccaatac 195  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||| ||| ||||    
T  2936984 gtaatattttatacccaagaaagatataaaattatt-caaccaattaatgcatataaacctaccaaccaaaattttccgatac 2937065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 2657422 - 2657344
Alignment:
Q  114 taatatttcatacccaagaaagatataaaattattacaaccaattaattcatataaaccaacgaaccaaaattctccaa 192  Q
    |||||||| ||||||||||||||||||||||||||| |||||  |||| ||||||||||||| ||| ||| ||||||||    
T  2657422 taatattttatacccaagaaagatataaaattattagaaccacgtaatgcatataaaccaaccaacaaaatttctccaa 2657344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 2980097 - 2980137
Alignment:
Q  251 ctaggctcataagcaaaaccatgcaactcaaacccatcata 291  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  2980097 ctaggttcataagcaaaaccatgcaactcaaacccatcata 2980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 2987327 - 2987383
Alignment:
Q  54 ttgttgaatgttttccggtattatc--attggtttcaaaaaggttgaaaatcggttt 108  Q
    |||||||||||||||| |||||||   ||||||||| ||||||||||||| ||||||    
T  2987327 ttgttgaatgttttccagtattatatgattggtttcgaaaaggttgaaaaacggttt 2987383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 38885775 - 38885830
Alignment:
Q  238 aggtgcagcaaacctaggctcataagcaaaaccatgcaactcaaacccatcataac 293  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38885775 aggtgtagccaacctaggctcataagcaaaaccatgcaactcaaacccatcataac 38885830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 33447 - 33386
Alignment:
Q  125 acccaagaaagatataaaattattacaaccaattaattcatataaaccaacgaaccaaaatt 186  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||    
T  33447 acccaagaaagatataaaaatattacaaccaattaatgcatatagaccaaccaaccaaaatt 33386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 37232 - 37176
Alignment:
Q  139 taaaattattacaaccaattaattcatataaaccaacgaaccaaaattctccaatac 195  Q
    ||||| ||||||||||||||||| |||||| |||||| |||||||||| ||| ||||    
T  37232 taaaaatattacaaccaattaatgcatatagaccaaccaaccaaaattatccgatac 37176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 42880 - 42826
Alignment:
Q  54 ttgttgaatgttttccggtattatcattggtttcaaaaaggttgaaaatcggttt 108  Q
    |||||||||||||||| |||||||||||| |||  |||||||| |||| ||||||    
T  42880 ttgttgaatgttttcctgtattatcattgattttgaaaaggtttaaaaacggttt 42826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 3346351 - 3346411
Alignment:
Q  54 ttgttgaatgttttccggtattatcattggtttcaaaaaggttgaaaatcggttttcatgt 114  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||| |||||| |||||    
T  3346351 ttgttgaatgtttttcggtataatcattggtttcgaaaaggttgaaaaacggtttccatgt 3346411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 3340545 - 3340602
Alignment:
Q  58 tgaatgttttccggtattatcattggtttcaaaaaggttgaaaatcggttttcatgta 115  Q
    |||||||||| || ||||||||||||||||  |||||||| ||| |||||| ||||||    
T  3340545 tgaatgtttttcgatattatcattggtttcggaaaggttgtaaaacggtttccatgta 3340602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University