View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12920_high_7 (Length: 401)
Name: NF12920_high_7
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_high_7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 52164126 - 52163750
Alignment:
| Q |
9 |
gattatactgcaaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccggga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52164126 |
gattatactgcaaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccggga |
52164027 |
T |
|
| Q |
109 |
atattgctccggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52164026 |
atattgctccggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgtt |
52163927 |
T |
|
| Q |
209 |
gcattggagtgggaaaggtaaaccttgggttagattggatgctagtaggccttgtcctttggatgcactttgggcaccctatgatctgttacaaactcca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52163926 |
gcattggagtgggaaaggtaaaccttgggttagattggatgctagtaggccttgtcctttggatgcactttgggcaccctatgatctgttacaaactcca |
52163827 |
T |
|
| Q |
309 |
ttttcttttgattcttgacaaatcttcaattcactacctgtgatgaaaggcgtgtttgacagtaacacatgtgtaat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
52163826 |
ttttcttttgattcttgacaaatcttcaattcactacctgtgatgaaaggcgtgtttgaaagtaacacatgtgtaat |
52163750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 42171847 - 42171903
Alignment:
| Q |
186 |
catcccggtcctgtgagtttgttgcattggagtgggaaaggtaaaccttgggttaga |
242 |
Q |
| |
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||||| ||||| |||||| | |||||||||||||||||||| || |||||| ||||| |
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|
| T |
42171847 |
catcctggtccggtgagtcttttgcattggagtgggaaagggaagccttggcttaga |
42171903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 6635221 - 6634914
Alignment:
| Q |
19 |
caaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctcc |
118 |
Q |
| |
|
||||||||||||| |||||||| || || ||||||||||| ||||||||| | ||||| ||||| || ||||||||||||||||| ||| | |||| ||| |
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|
| T |
6635221 |
caaagattgaggaatggatggaattacaaaagaggatgagaatctatgaacttggttcattgccaccttttttgcttgtttttgcaggggaaattgttcc |
6635122 |
T |
|
| Q |
119 |
ggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagt |
218 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| |||||||||||| |
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|
| T |
6635121 |
agtggatcatagatggaatcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagt |
6635022 |
T |
|
| Q |
219 |
gggaaaggtaaaccttgggttagattggatgctagtaggccttgtcctttggatgcactttgggcaccctatgatctgttacaaactccattttcttttg |
318 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||| || || || ||||||||| ||| |
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|
| T |
6635021 |
ggaaaaggtaaaccatgggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatgatcttttgcagacaccattttctcttg |
6634922 |
T |
|
| Q |
319 |
attcttga |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
6634921 |
attcttga |
6634914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 40207480 - 40207521
Alignment:
| Q |
120 |
gtggatcataggtggaatcaacatggacttggtggtgataat |
161 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
40207480 |
gtggatcataggtggaatcaacacggacttggaggtgataat |
40207521 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 33346586 - 33346779
Alignment:
| Q |
33 |
tggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccggtggatcataggt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| | ||||||||||||| ||| | ||||||||||| ||| |
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|
| T |
33346586 |
tggatggagttgcagaagagaatgagaatctatgagcttggttcgttgccgccgtttttgttggtttttgccgggaggattacgccggtggatcaccggt |
33346685 |
T |
|
| Q |
133 |
ggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaagg |
226 |
Q |
| |
|
||||||| ||||| || || ||||||||||||||||| |||||| | || | ||||| || || ||||||||||||||||||||||| ||||| |
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|
| T |
33346686 |
ggaatcagcatgggctcggcggtgataattttcgtgggctttgtcgggatttgcatccaggcccggtgagtttgttgcattggagtggaaaagg |
33346779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 274
Target Start/End: Complemental strand, 7266511 - 7266270
Alignment:
| Q |
33 |
tggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccggtggatcataggt |
132 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| | ||||| |||||||||||| |||||||||| || || || || | |||||| |||||| ||| |
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|
| T |
7266511 |
tggatggagcttcagaagagaatgaggatctatgagcttggttcattgccgccgtttctgcttgttttcgcaggtaaaatagttccggttgatcatcggt |
7266412 |
T |
|
| Q |
133 |
ggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaaggtaaacc |
232 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| | ||| |||||| | || | ||||| || || |||||||| | |||||||||||||| |||||||| |
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|
| T |
7266411 |
ggaatcaacatgggcttggcggtgataatttccatgggctttgtcgggatttgcatccgggcccggtgagtttacttcattggagtgggaagggtaaacc |
7266312 |
T |
|
| Q |
233 |
ttgggttagattggatgctagtaggccttgtcctttggatgc |
274 |
Q |
| |
|
|||| || | ||||||| | | |||||||| |||||||| |
|
|
| T |
7266311 |
gtgggccaggcttgatgctaatcgtccttgtccgttggatgc |
7266270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 15964453 - 15964232
Alignment:
| Q |
20 |
aaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccg |
119 |
Q |
| |
|
||||||||| | ||||||||||| || |||| || || |||||||| | ||||| ||||| || ||||| ||||||||||| || ||| ||| | |
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|
| T |
15964453 |
aaagattgaaaactggatggagttacaaaagaagagaagaatctatgagctaggttcattgccaccttttttacttgtttttgcaggaaatgttgaagct |
15964354 |
T |
|
| Q |
120 |
gtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtg |
219 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | | ||||| |||||||| ||||| ||||||||||||| |
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|
| T |
15964353 |
attgatcatagatggaatcaacatggacttggtggtgataatttgaatggtgtttgtagatctttgcatcctggtcctgttagtttattgcattggagtg |
15964254 |
T |
|
| Q |
220 |
ggaaaggtaaaccttgggttag |
241 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
15964253 |
gaaaaggaaaaccttgggttag |
15964232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 2498608 - 2498502
Alignment:
| Q |
126 |
cataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaag |
225 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| || || | |||||||| | | ||||| ||||| || |||||||| ||||||||||| |||| |
|
|
| T |
2498608 |
catagatggaatcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaag |
2498509 |
T |
|
| Q |
226 |
gtaaacc |
232 |
Q |
| |
|
| ||||| |
|
|
| T |
2498508 |
ggaaacc |
2498502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 27101196 - 27101090
Alignment:
| Q |
126 |
cataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaag |
225 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| || || | |||||||| | | ||||| ||||| || |||||||| ||||||||||| |||| |
|
|
| T |
27101196 |
catagatggaatcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaag |
27101097 |
T |
|
| Q |
226 |
gtaaacc |
232 |
Q |
| |
|
| ||||| |
|
|
| T |
27101096 |
ggaaacc |
27101090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 37500870 - 37500754
Alignment:
| Q |
120 |
gtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtg |
219 |
Q |
| |
|
|||||||||||||||||||||||||| | || || || ||| || ||| ||||| | ||||||||| || ||||| |||||| | |||||||||| |
|
|
| T |
37500870 |
gtggatcataggtggaatcaacatggtttaggaggggacaatattgaaggtaaatgtaggagtcttcatcctgggcctgttagtttgcttcattggagtg |
37500771 |
T |
|
| Q |
220 |
ggaaaggtaaaccttgg |
236 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
37500770 |
ggaagggtaaaccttgg |
37500754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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