View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12920_high_8 (Length: 389)

Name: NF12920_high_8
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12920_high_8
NF12920_high_8
[»] chr5 (2 HSPs)
chr5 (18-379)||(33184607-33184968)
chr5 (60-96)||(22919832-22919868)
[»] scaffold0482 (2 HSPs)
scaffold0482 (62-219)||(971-1118)
scaffold0482 (241-302)||(918-979)
[»] chr8 (6 HSPs)
chr8 (62-219)||(7774148-7774295)
chr8 (62-219)||(7790795-7790942)
chr8 (62-219)||(7811380-7811527)
chr8 (241-302)||(7811519-7811580)
chr8 (241-302)||(7774287-7774348)
chr8 (241-302)||(7790934-7790995)
[»] chr1 (2 HSPs)
chr1 (47-145)||(41147744-41147842)
chr1 (184-228)||(41147842-41147886)


Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 33184968 - 33184607
Alignment:
Q  18 gataatggtatatgatttggttatgtttatgattgataggttggagtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184968 gataatggtatatgatttggttatgtttatgattgataggttggagtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatgg 33184869  T
Q  118 atggcataaacccttaaatgaagaagctcttgatgatcagagtcatctattacatggtgtgattcattgcaatggttatggccatttggtatgtcttaat 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184868 gtggcataaacccttaaatgaagaagctcttgatgatcagagtcatctattacatggtgtgattcattgcaatggttatggccatttggtatgtcttaat 33184769  T
Q  218 ggcattgaaggtggttccaaatttcttagtgggagagaaatcatggatctatgggacagaatttgcatcaatcttagagcaaggtgataaaaatcattcg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  33184768 ggcattgaaggtggttccaaatttcttagtgggagagaaatcatggatctatgggacagaatttgcaccaatcttagagcaaggtgataaaaatcattca 33184669  T
Q  318 tattagttatagcatatagtatgtagtatatagttgcatttctggtatttatgagatgatgt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  33184668 tattagttatagcatatagtatgtagtatatagttgcatttcttgtatttatgagttgatgt 33184607  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 22919832 - 22919868
Alignment:
Q  60 ggagtggacattttgtatcaaagagaaggtaccattt 96  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  22919832 ggagtggacattttgcatcaaacagaaggtaccattt 22919868  T

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Target: scaffold0482 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 1118 - 971
Alignment:
Q  62 agtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatggatgg-----cataaacccttaaatgaagaagctcttgatgatca 156  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||||||      
T  1118 agtggacattttgtatcatagagaaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgat-- 1021  T
Q  157 gagtcatctattacatggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 219  Q
                 ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1020 -------------catggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 971  T

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Target: scaffold0482; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 979 - 918
Alignment:
Q  241 tcttagtgggagagaaatcatggatctatgggacagaatttgcatcaatcttagagcaaggt 302  Q
    ||||| |||||||| |||||||||||||||| ||  |||| ||| ||||||| |||||||||    
T  979 tcttaatgggagaggaatcatggatctatggaaccaaattagcaccaatcttggagcaaggt 918  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 7774148 - 7774295
Alignment:
Q  62 agtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatggatgg-----cataaacccttaaatgaagaagctcttgatgatca 156  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||||||      
T  7774148 agtggacattttgtatcatagagaaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgat-- 7774245  T
Q  157 gagtcatctattacatggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 219  Q
                 ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7774246 -------------catggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 7774295  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 7790795 - 7790942
Alignment:
Q  62 agtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatggatgg-----cataaacccttaaatgaagaagctcttgatgatca 156  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||||||      
T  7790795 agtggacattttgtatcatagagaaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgat-- 7790892  T
Q  157 gagtcatctattacatggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 219  Q
                 ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7790893 -------------catggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 7790942  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 7811380 - 7811527
Alignment:
Q  62 agtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatggatgg-----cataaacccttaaatgaagaagctcttgatgatca 156  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||||||      
T  7811380 agtggacattttgtatcatagagaaggtaccattttataatcccaatggatgatgggtgggcaatcataaacccttaaatgaagaagctcttgatgat-- 7811477  T
Q  157 gagtcatctattacatggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 219  Q
                 ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7811478 -------------catggtgtgattcattgcaatggttatggccatttggtatgtcttaatgg 7811527  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 7811519 - 7811580
Alignment:
Q  241 tcttagtgggagagaaatcatggatctatgggacagaatttgcatcaatcttagagcaaggt 302  Q
    ||||| |||||||| |||||||||||||||| ||  |||| ||| |||||||||||||||||    
T  7811519 tcttaatgggagaggaatcatggatctatggaaccaaattagcaccaatcttagagcaaggt 7811580  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 7774287 - 7774348
Alignment:
Q  241 tcttagtgggagagaaatcatggatctatgggacagaatttgcatcaatcttagagcaaggt 302  Q
    ||||| |||||||| |||||||||||||||| ||  |||| ||| ||||||| |||||||||    
T  7774287 tcttaatgggagaggaatcatggatctatggaaccaaattagcaccaatcttggagcaaggt 7774348  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 7790934 - 7790995
Alignment:
Q  241 tcttagtgggagagaaatcatggatctatgggacagaatttgcatcaatcttagagcaaggt 302  Q
    ||||| |||||||| |||||||||||||||| ||  |||| ||| ||||||| |||||||||    
T  7790934 tcttaatgggagaggaatcatggatctatggaaccaaattagcaccaatcttggagcaaggt 7790995  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 41147744 - 41147842
Alignment:
Q  47 tgattgataggttggagtggacattttgtatcaaagagaaggtaccattttataatcccaatggatgatggatggcataaacccttaaatgaagaagct 145  Q
    |||||| |||||||||| |  ||||||| |||||||||||| || ||||| ||||||||||||||  |||  |||||||||  | ||||||||||||||    
T  41147744 tgattgttaggttggagggaccattttgaatcaaagagaagttaacatttcataatcccaatggacaatgagtggcataaattcctaaatgaagaagct 41147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 41147842 - 41147886
Alignment:
Q  184 ttgcaatggttatggccatttggtatgtcttaatggcattgaagg 228  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||    
T  41147842 ttgcaatggttatggtcatttgatatgtcttaatgacattgaagg 41147886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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