View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_16 (Length: 313)
Name: NF12920_low_16
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 41030391 - 41030682
Alignment:
| Q |
17 |
agaatttgtgaagactatgaactcaaacaattatcgtgacagagttgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctcc |
116 |
Q |
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| T |
41030391 |
agaatttgtgaagactatgaactcaaacaattatcgtgacagagttgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctcc |
41030490 |
T |
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| Q |
117 |
aggaagaaattgagtgtaaccgagaagaccataaaatatttcagcagtgtaaaagagagtgtgatttgtgctagcaatatattatattgtaatagtaagg |
216 |
Q |
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| T |
41030491 |
aggaagaaattgagtgtaaccgagaagaccataaaatatttcagcagtttaaaagagagtgtgatttgtgctagcaatatattatgttgtaatagtaagg |
41030590 |
T |
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| Q |
217 |
gtaatcgtaagattcttgggagggctaagcatatcactcatgctgctgtgtcagtctaccataggttgctttctcgatctgatgatgtccat |
308 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
41030591 |
gtaatcgtaagattcctgggagggctaagcatatcactcatgctgctgtgtcagtctaccataggttgctttctcgatctgataaggtccat |
41030682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 41035993 - 41036266
Alignment:
| Q |
17 |
agaatttgtgaagactatgaactcaaacaattatcgtgacagagttgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctcc |
116 |
Q |
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||||||||||||||||||||||| || ||||||||||| ||| |||||||||||| ||||| ||||||||| |||| | ||||||||||||||||| |
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| T |
41035993 |
agaatttgtgaagactatgaactgtaaaaattatcgtgatggagctgaagttgatagtctctcttgcaggcaaatgtatttcaggagctacaaattctca |
41036092 |
T |
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| Q |
117 |
aggaagaaattgagtgtaaccgagaagaccataaaatatttcagcagtgtaaaagagagtgtgatttgtgctagcaatatattatattgtaatagtaagg |
216 |
Q |
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| T |
41036093 |
aggaagaaattaagtatcactgggaagagcataaaatgtttcagaagtgtaaaggagggtgtggtttgtgccagcaatagattaaatcataatattaagg |
41036192 |
T |
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| Q |
217 |
gtaatcgtaagattcttgggagggctaagcatatcactcatgctgctgtgtcagtctaccataggttgctttctcgatctgat |
299 |
Q |
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||||| |||||||||| |||| |||| ||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
41036193 |
gtaattgtaagattctaggga---------atattactcatgctgctgtgtcagtctattgtagattgctttctcggtctgat |
41036266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 41044675 - 41044733
Alignment:
| Q |
213 |
aagggtaatcgtaagattcttgggagggctaagcatatcactcatgctgctgtgtcagt |
271 |
Q |
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||||||||| |||||||||| |||| |||||||||| |||||||||||| ||||||||| |
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| T |
41044675 |
aagggtaattgtaagattctagggaaggctaagcatgtcactcatgctgttgtgtcagt |
41044733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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