View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_17 (Length: 306)
Name: NF12920_low_17
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 96 - 295
Target Start/End: Complemental strand, 8540239 - 8540041
Alignment:
| Q |
96 |
ttcctaaatagttactttgttcttctagcctaaatgttttctatggtggtcgacttcgccactttcttctgtttgcggtgtgcattataattcattactt |
195 |
Q |
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| T |
8540239 |
ttcctaagtacttacttt-ttcttctagcctaaatgttttctatggtggtcgacttcgccactttcttctgtttggagtgtgcgttataattcattactt |
8540141 |
T |
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| Q |
196 |
ttctcttttctcgttgctcagtgcttagttaccaacttaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaactct |
295 |
Q |
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| T |
8540140 |
ttctcttttgtctttgctcagtgcttagttaccaactcaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaactct |
8540041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 8588470 - 8588375
Alignment:
| Q |
118 |
ttctagcctaaatgttttctatggtggtcgacttcgccactttcttctgtttgcggtgtgcattataattcattacttttctcttttctcgttgct |
213 |
Q |
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| T |
8588470 |
ttctagcctaaatgttttctacggtggtcgtcttcgccactttcttcggtttgtggtgtgcattatacttcatcacttctctctttgctcattgct |
8588375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 8568997 - 8568921
Alignment:
| Q |
217 |
tgcttagttaccaacttaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaact |
293 |
Q |
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| T |
8568997 |
tgcttagttaccaactcaattgttctaataaaatcgtaatttgtattcccatttttagatcggaaaatgttgcaact |
8568921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 8569038 - 8568997
Alignment:
| Q |
162 |
ttctgtttgcggtgtgcattataattcattacttttctcttt |
203 |
Q |
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| T |
8569038 |
ttctgtttgcggagtgcatcatacttcattacttttctcttt |
8568997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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