View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_18 (Length: 299)
Name: NF12920_low_18
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 41079978 - 41080259
Alignment:
| Q |
1 |
tcgttgtttgtttcttattttagtgataaatatatctcgttattttcaaaatacaatnnnnnnncatcaagaggtctatatgtttcttttatatgacaag |
100 |
Q |
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| T |
41079978 |
tcgttgtttgtttcttattttagtgataaatatatctcgttattttcaaaatacaataaaaaaacatcaagaggtctatatgtttcttttatatgacaag |
41080077 |
T |
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| Q |
101 |
tagtacctgaacctgaaattaaactaactatataaaacagttggaacataaatgcaacaaatatgttatattaaatatcccctcttaagttggaagatat |
200 |
Q |
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| T |
41080078 |
tagtacctgaacctgaaattaaactaactatataaaacagttagaacataaatgcaacaaatatgttatattaaatatcccctcttaagttggaagatat |
41080177 |
T |
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| Q |
201 |
atgttcaatatccccaactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagttcat |
282 |
Q |
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| T |
41080178 |
atgttcaatatccccaactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagttcat |
41080259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 117 - 279
Target Start/End: Original strand, 41091445 - 41091606
Alignment:
| Q |
117 |
aattaaactaactatataaaacagttggaacataaatgcaacaaatatgttatattaaatatcccc-tcttaagttggaagatatatgttcaatatcccc |
215 |
Q |
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| T |
41091445 |
aattaaactaactata--aaacagtgataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatcccc |
41091542 |
T |
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| Q |
216 |
aactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagtt |
279 |
Q |
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| T |
41091543 |
aacttggaaatgagatgcagaatagggattttaggtagtgcttttttcaatgggtcagctagtt |
41091606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 41101559 - 41101708
Alignment:
| Q |
131 |
tataaaacagttggaacataaatgcaacaaatatgttatattaaatatcc-cctcttaagttggaagatata-tgttcaatatccccaactaggaaatga |
228 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||| |||||||||| |||| ||||||||||| |||||| |||||||| |
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| T |
41101559 |
tataaaacagtaataacataaatgcaagaaatttgttatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatga |
41101658 |
T |
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| Q |
229 |
gatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagtt |
279 |
Q |
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| T |
41101659 |
gatgctgaaaagggatttt-ggtagtgcttttttcaatgggtaagctagtt |
41101708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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