View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_24 (Length: 243)
Name: NF12920_low_24
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_24 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 780819 - 781042
Alignment:
| Q |
20 |
tggtaaagggtgatcctctaattaacacccaaaaagttgaacctgagagcagcaaacttggtgaactggattccgagactcgaatgaccgttgaaaagat |
119 |
Q |
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| T |
780819 |
tggtaaagggtgatcctctaattaacacccaaaaagttgaacctgagagcagcaaacttggtgaactggattccgagactcgaatgaccgttgaaaagat |
780918 |
T |
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| Q |
120 |
gatggtaactagtttgtttttgaatatgtcatcgtatttgtttcgcatgatccgtcttgattaatgttatcttgtattgttcaacagtttgatcagaggc |
219 |
Q |
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| T |
780919 |
gatggtaactagtttgtttttgaatatgtcatcgtatttgtttcgcatgatccgtcttaattaatgttatcttgtattgttcaacagtttgatcagagac |
781018 |
T |
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| Q |
220 |
aaaagtctatgggccttcctacaa |
243 |
Q |
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| T |
781019 |
agaagtctatgggccttcctacaa |
781042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 770542 - 770437
Alignment:
| Q |
25 |
aagggtgatcctctaattaacacccaaaaagttgaacctgagagcagcaaacttggtgaactggattccgagactcgaatgaccgttgaaaagatgatgg |
124 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
770542 |
aagggtgatcctgaaattaacacccaaaaagttgaacctgcaagcagcaaacttggtgacctggattctgagactcgaatgaccgttgaaaagatgatgg |
770443 |
T |
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| Q |
125 |
taacta |
130 |
Q |
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| T |
770442 |
taacta |
770437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 785572 - 785678
Alignment:
| Q |
25 |
aagggtgatcctctaattaacacccaaaaagttgaacctgagagcagcaaacttggtgaactggattccgagactcgaatgaccgttgaaaagatgatgg |
124 |
Q |
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| T |
785572 |
aagggtgatcctgaaattaacacccaaaaagttgaacctgagagcagcaaacttggtgaccttgatcctgagactcgacagactgttgaaaagatgatgg |
785671 |
T |
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| Q |
125 |
taactag |
131 |
Q |
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||||||| |
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| T |
785672 |
taactag |
785678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 770242 - 770178
Alignment:
| Q |
180 |
ttaatgttatcttgtattgttc-aacagtttgatcagaggcaaaagtctatgggccttcctacaa |
243 |
Q |
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| T |
770242 |
ttaatgttatgctgtattgttccaacagtttgatcagaggcaaaagtctatgggccttcctacaa |
770178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 785909 - 785969
Alignment:
| Q |
183 |
atgttatcttgtattgttcaacagtttgatcagaggcaaaagtctatgggccttcctacaa |
243 |
Q |
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| T |
785909 |
atgttatcttgtattatttaacagtttgatcagaggcagaagtctatgggccttcctacaa |
785969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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