View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_26 (Length: 230)
Name: NF12920_low_26
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 24198002 - 24198213
Alignment:
| Q |
1 |
tgaatattcccttaaacacatcaaaacattgttattt-catcatcacagtcaaaatcaattgttacggttgagaagacatcaaacagtagtcgcggttga |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24198002 |
tgaatattcccttaaacacatcaaaacattgttattttcttcatcactgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttga |
24198101 |
T |
|
| Q |
100 |
gaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttattttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaacg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24198102 |
gaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttattttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaacg |
24198201 |
T |
|
| Q |
200 |
atgacggcgaca |
211 |
Q |
| |
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|||||||||||| |
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| T |
24198202 |
atgacggcgaca |
24198213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 43449786 - 43449997
Alignment:
| Q |
1 |
tgaatattcccttaaacacatcaaaacattgttattt-catcatcacagtcaaaatcaattgttacggttgagaagacatcaaacagtagtcgcggttga |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43449786 |
tgaatattcccttaaacacatcaaaacattgttattttcttcatcattgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttga |
43449885 |
T |
|
| Q |
100 |
gaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttattttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaacg |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43449886 |
gaagaataaactaatttatttcaaaagatgagaagaacaaactaatttattttgagcggtggttcagcggtgacagcgatgaagacattaaacaacaacg |
43449985 |
T |
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| Q |
200 |
atgacggcgaca |
211 |
Q |
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|||||||||||| |
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| T |
43449986 |
atgacggcgaca |
43449997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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