View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_3 (Length: 512)
Name: NF12920_low_3
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_3 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 494
Target Start/End: Complemental strand, 5762 - 5281
Alignment:
| Q |
13 |
aaaataaaaaccctatattttttagtgctagcttctaacaacattctaacactaattagatactactagtatttttctttcatatcaattaattaccctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5762 |
aaaataaaaaccctatattttttagtgctagcttctaacaacattctaacactaattagatactactagtatttttctttcatatcaattaattaccctt |
5663 |
T |
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| Q |
113 |
acactatcttaattactaacaacataaaattgcatccctaagcaccaaaataaggattataaaatctaaaaaatgacatgtttgagaccaatatcttttt |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662 |
acactatctcaattactaacaacataaaattgcatccctaagcaccaaaataaggattataaaatctaaaaaatgacatgtttgagaccaatatcttttt |
5563 |
T |
|
| Q |
213 |
gttttgatttgagtcatgtagatagcacaataacatgcatatattgtaccaaacaaagtaacaacaacaaagaaagagacaaagtttgttggagtttggt |
312 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562 |
gttctgatttgagtcatgaagatagcacaataacatgcatatattgtaccaaacaaagtaacaacaacaaagaaagagacaaagtttgttggagtttggt |
5463 |
T |
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| Q |
313 |
tgatgaagattgatcatagaactcagatgaatcaacagctagaggcattccatcactatttagagtgcatgattgtggtttagatccatctttgttcaac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5462 |
tgatgaagattgatcatagaactcagatgaatcaacagctagaggcattccatcactatttagagtgcatgattgtggtttagatccatctttgttcaac |
5363 |
T |
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| Q |
413 |
aacaaagcacgaagaacgttagtaaccgtgtgaatataagccgtccgattcttcgacagaagccatgtcaagcccattagct |
494 |
Q |
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| T |
5362 |
aacaaagcacgaagaacgttagtaaccgtgtgaatataagccgtccgattcttcgacagaagccatgtcaagcccattagct |
5281 |
T |
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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 312 - 492
Target Start/End: Original strand, 45125785 - 45125965
Alignment:
| Q |
312 |
ttgatgaagattgatcatagaactcagatgaatcaacagctagaggcattccatcactatttagagtgcatgattgtggtttagatccatctttgttcaa |
411 |
Q |
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||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| | ||||||||| | |||| |
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| T |
45125785 |
ttgatgaagattgatcatacatttcagaagaatcaacagcaagaggcattccatcactattaagagtacatgattgtgggtcagatccatcagggctcaa |
45125884 |
T |
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| Q |
412 |
caacaaagcacgaagaacgttagtaaccgtgtgaatataagccgtccgattcttcgacagaagccatgtcaagcccattag |
492 |
Q |
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|| ||||||||||||||| |||||| |||||||| |||| |||| |||||| | ||||||||||| || |||||||| |
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| T |
45125885 |
catcaaagcacgaagaacccaagtaactgtgtgaatgtaagttgtcctattcttagcaagaagccatgttaatcccattag |
45125965 |
T |
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