View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12920_low_4 (Length: 442)
Name: NF12920_low_4
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 31863793 - 31863665
Alignment:
| Q |
218 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
317 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31863793 |
acttaataactttaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
31863694 |
T |
|
| Q |
318 |
cacaatttagataaacacaagaaacttct |
346 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
|
|
| T |
31863693 |
cacaatttagatatacacaagaaacttct |
31863665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 218 - 339
Target Start/End: Complemental strand, 31929951 - 31929830
Alignment:
| Q |
218 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
317 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||| |||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
31929951 |
acttaataaattaaatttgtagagtatcatcattatcttatagatccaacctacttcatatggcgtttttttacaatcaccacattcttcacatgtgttc |
31929852 |
T |
|
| Q |
318 |
cacaatttagataaacacaaga |
339 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
31929851 |
cacaatttagatatacacaaga |
31929830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 31898007 - 31897879
Alignment:
| Q |
218 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgttc |
317 |
Q |
| |
|
||||||||| |||||||||||||| | ||| |||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31898007 |
acttaataaattaaacttgtagagagtcatcattatcttatagatccaacctacttcatacggcgttcttttacaatcaccacattcttcacatgtgttc |
31897908 |
T |
|
| Q |
318 |
cacaatttagataaacacaagaaacttct |
346 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |
|
|
| T |
31897907 |
cacaatttagatatacataagaaacttct |
31897879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 31863943 - 31863868
Alignment:
| Q |
68 |
ctgacttcagactttgacttatcacatccttcttcctatggaggatttgttgagacaatcattcatatttttcatg |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31863943 |
ctgacttcagactttgacttatcacacccttcttcctctggaggatttgttgagacaatcattcatatttttcatg |
31863868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University