View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_5 (Length: 423)
Name: NF12920_low_5
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_5 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 498669 - 498458
Alignment:
| Q |
8 |
cgaagaatataaccttgcagaagagagtgaatcccaaactatccccgagccaatctcctcggagatggagaaaactctctctgtgcctaatcataatggt |
107 |
Q |
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| T |
498669 |
cgaagaaaataaccttgcagaagagagtgaatcccaaactatccccgagccaatctcctcggagatggagaaaactctctctgtgcctaatcataatggt |
498570 |
T |
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| Q |
108 |
ttcaacaatattcttgcataccgctgcaattcacccacctcactatttatattactaaataataacctatgaagtacgaacacaaacaccggacacaaca |
207 |
Q |
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| T |
498569 |
ttcaacaatattcttgcataccgctgcaattcacccaactcactatttatactactaaatcataacctatgaagcacgaacacaaacaccggacaccaca |
498470 |
T |
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| Q |
208 |
cggacactggca |
219 |
Q |
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|||||| ||||| |
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| T |
498469 |
cggacaatggca |
498458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 498125 - 498040
Alignment:
| Q |
235 |
agcaaagtttgccaagttagtctcatcactttccctgcatgtgtaaaattccccatttcgtaatgaatattgaaatattatttcca |
320 |
Q |
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| T |
498125 |
agcaaagtttgccaagttagtctcatcactttccctgcatgtgtaaaattccccatttcgtaatgaatattgaaatattatttcca |
498040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 498038 - 498003
Alignment:
| Q |
371 |
cgtcgagtttacggtgatagctgtgaaatgaggatt |
406 |
Q |
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| T |
498038 |
cgtcgagtttaaggtgatagctgtgaaatgaggatt |
498003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 8221960 - 8221906
Alignment:
| Q |
54 |
gagccaatctcctcggagatggagaaaactctctctgtgcctaatcataatggtt |
108 |
Q |
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| T |
8221960 |
gagccaatctcctcgtagaagaagaaaactctttatttgcctaatcataatggtt |
8221906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 34084236 - 34084134
Alignment:
| Q |
26 |
agaagagagtgaatcccaaactatccccg-agccaatctcctcggagatggagaaaactctctctgtgcctaatcataatggtttcaacaatattcttgc |
124 |
Q |
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| T |
34084236 |
agaagggagtgaatcccaatctaccccaggagccaagttcctcatagatggagaaaactttctctctgcctaaccataatggttcagccaatattcttgc |
34084137 |
T |
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| Q |
125 |
ata |
127 |
Q |
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||| |
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| T |
34084136 |
ata |
34084134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 26411286 - 26411415
Alignment:
| Q |
35 |
tgaatcccaaactatccccgagccaatctcctcggagatggagaaaactctctctgtgcctaatcataatggtttcaacaatattcttgcatacc-gctg |
133 |
Q |
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||||| |||||||| ||| |||| || |||||| ||| ||||| ||||| ||| ||||||| |||||||||| | |||||||||||| ||||| || |
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| T |
26411286 |
tgaattccaaactaccccagagcaaagctcctcaaagaaagagaacactctttctatgcctaaccataatggttcccacaatattcttgtatacctacta |
26411385 |
T |
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| Q |
134 |
caattcacccacctcactatttatattact |
163 |
Q |
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| T |
26411386 |
ccattcacctacctcattatttatactact |
26411415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 56864 - 56914
Alignment:
| Q |
166 |
ataataacctatgaagtacgaacacaaacaccggacacaacacggacactg |
216 |
Q |
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|||||||||||||||| ||| |||||||||| ||||||||||| |||||| |
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| T |
56864 |
ataataacctatgaagcacggacacaaacactagacacaacacgcacactg |
56914 |
T |
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