View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12920_low_6 (Length: 420)
Name: NF12920_low_6
Description: NF12920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12920_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 6552147 - 6551742
Alignment:
| Q |
18 |
tataccatcacgttagaaaattcctcaacagactcaacaaggtttttcgtccaatttcc------------ataaataaacatttgcatgaggagaaagt |
105 |
Q |
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| T |
6552147 |
tataccatcacgttggaaaattcctcaacagactcaacaaggtttttcgtccaatttccgtaaaactttctataaataaacatttgcatgaggagaaagt |
6552048 |
T |
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| Q |
106 |
tacacacactatattctaaaaaacctttcaactatctcattcatgaattgaccaaagctttggagtatttgcagacactaaattctaaaaaacctttcaa |
205 |
Q |
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| T |
6552047 |
tacacacactatattctaaaaaacctttcaactatctcattcatgaattgaccaaagctttggagtatttgcaaacactaaattctaaaaaacctttcaa |
6551948 |
T |
|
| Q |
206 |
nnnnnnnc-tttcttcatccctataaaattctggatatgccactagcaaccaccacaacaaaccgagaaacatcaacttcatataataaaactaaacgaa |
304 |
Q |
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| T |
6551947 |
ttttttttatttcttcatccctataaaattctggatatgccactagcaaccaccacaacaaaccgtgaaacatcaacttcatataataaaactaaacgaa |
6551848 |
T |
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| Q |
305 |
taatagcctcaaaatcagacataagtgattgatctttatgccaaaggagtaatttatctatatgatagatatatcgatggaatagcaccacacacactaa |
404 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6551847 |
taatagcctcaaaatcagacataagtgattgattcttatgccaaaggagtaatttatctatat----gatatatcgatggaatagcaccacacacactaa |
6551752 |
T |
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| Q |
405 |
tgatgatgtc |
414 |
Q |
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| T |
6551751 |
ttatgatgtc |
6551742 |
T |
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