View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_high_1 (Length: 845)
Name: NF12921_high_1
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 737; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 57 - 837
Target Start/End: Complemental strand, 34318721 - 34317940
Alignment:
| Q |
57 |
acatttcttttgcaatgatgaatttacttgcgtgattcagcaagcattttgctatgaaccattgttggtttacaaaattacaaacgtgcgaaaatgcttc |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34318721 |
acatttcttttgcaatgatgaatttacttgcgtgattcagcaagcattttgctatgaaccattgttggtttacaaaattacaaacgtgcgaaaatgcttc |
34318622 |
T |
|
| Q |
157 |
tcgaactaccaagttggtagcattaagaaagaaaacaagcttattgataagcttaatgtttcctcatcagacatcatatccttttctatatgtttttcat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34318621 |
tcgaactaccaagttggtagcattaagaaagaaaacaagcttattgataagcttaatgtttcctcatcagacatcatatccttttctatatgtttttcat |
34318522 |
T |
|
| Q |
257 |
tatcaaaatcctatctaacaagggnnnnnnn-tacctaatagtaagcagttatttcatttgcggagttggactttcgttgaagatgcatgaaaaggcaag |
355 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34318521 |
tatcgaaatcctatctaacaagggaaaaaaaatacctaatagtaagcagttatttcatttgcggagttggactttcgttgaagatgcatgaaaaggcaag |
34318422 |
T |
|
| Q |
356 |
acagaatcaaatatcatgctaagaataatctcctgaagcatacaaatttttaggaacttcaggaataagccttggatcataatactctgacatctctata |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34318421 |
acagaatcaaatatcatgctaagaataatctcctgaagcatacaaattggtaggaacttcaggaataagccttggatcataatactctgacatctctata |
34318322 |
T |
|
| Q |
456 |
ttctgcatgtcaaagttcatatcatagtattcaccttgtaacaagaacaaatttaagtcctcgtccaaaggtgttgaagctgactcaatacccaaaagta |
555 |
Q |
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| T |
34318321 |
ttctgcatgtcaaagttcatatcatagtattcaccttgtaacaagaacaaatttaagtcctcgtccaaaggtgttgaagctgactcaatacccaaaagta |
34318222 |
T |
|
| Q |
556 |
agtttctttggtagatttccatatcagaagcgcagccaagattaaattttggtgtttttaaactcaaatttgaagtgaaaatgatatcgcttttggactg |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34318221 |
agtttctttggtagatttccatatcagaagcgcagccaagattaaattttggtgtttttaaactcaaatttgaagtgaaaatgatatcgcttttggactg |
34318122 |
T |
|
| Q |
656 |
actaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattgatagtgatcggtca |
755 |
Q |
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| T |
34318121 |
actaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaaccggagggattggaattaattgatagtgatcggtca |
34318022 |
T |
|
| Q |
756 |
ttttggaagtgttgctgtgtaacatttaatggcaaatggctgagattatcctttaattgtacaagtgtgttaagttcttctc |
837 |
Q |
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| T |
34318021 |
ttttggaagtgttgctgtgtaacatttaatggcaaatggctgagattatcctttaattgtacaagtgtgttaagttcttctc |
34317940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 644 - 825
Target Start/End: Complemental strand, 26376159 - 26375978
Alignment:
| Q |
644 |
gcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattgat |
743 |
Q |
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|||||||||| |||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
26376159 |
gcttttggacggactagaaaaggtatcatctgaagacatcattgaattcacagaactaatgtaatcactgttgtaatgagagggattagaattaattgaa |
26376060 |
T |
|
| Q |
744 |
agtgatcggtcattttggaagtgttgctgtgtaacatttaatggcaaatggctgagattatcctttaattgtacaagtgtgt |
825 |
Q |
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| T |
26376059 |
attgattggtaaatttggaagtgttgttgtgtaacatttaatggcaaatggatgagattgtcctttaattgtacaagtgtgt |
26375978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 643 - 741
Target Start/End: Complemental strand, 35680779 - 35680681
Alignment:
| Q |
643 |
cgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattg |
741 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||| |||||||| |||||| |||||||||||||||||||| |
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| T |
35680779 |
cgcttttggactgactaggaaaggtatcaactgatgacaccattgaattcacaagattaatctaatcactgttgtaatgggagggattggaattaattg |
35680681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 758 - 836
Target Start/End: Complemental strand, 35680683 - 35680602
Alignment:
| Q |
758 |
ttggaagtgttgctgtgtaacatttaatggcaaatggctgag---attatcctttaattgtacaagtgtgttaagttcttct |
836 |
Q |
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|||||||||||| |||||||||||||| |||||||||| ||| || |||||||||||||||||||||| | |||||||| |
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| T |
35680683 |
ttggaagtgttgttgtgtaacatttaacggcaaatggcggagtaatttgtcctttaattgtacaagtgtgtcacgttcttct |
35680602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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