View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_high_12 (Length: 335)
Name: NF12921_high_12
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 32427824 - 32427525
Alignment:
| Q |
19 |
ctcgtgtcttgttttagagctcaaaagccgtggaagtgtagttagttttcaatcacatcgatcgctgaatcaaaacgcagcgttcattgatccacaatat |
118 |
Q |
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| T |
32427824 |
ctcgtgtcttgttttagagctcaaaagccgtggaagtgtagttagttttcaatcacatcgatcgctgaatcaaaacgcagcgttcattgatccacaatat |
32427725 |
T |
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| Q |
119 |
cgacgatggcagagaagaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcat |
218 |
Q |
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| T |
32427724 |
cgatgatggcagagaagaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcat |
32427625 |
T |
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| Q |
219 |
gaatgttgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgc |
318 |
Q |
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| T |
32427624 |
gaatgtcgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgc |
32427525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 127 - 318
Target Start/End: Complemental strand, 32421879 - 32421688
Alignment:
| Q |
127 |
gcagagaagaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttg |
226 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||| | | |||||| ||||| |||| |
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| T |
32421879 |
gcagagaagaagcccaaaactaagatcgtttgcacgctgggacccgcatctaggtctgttcccatggtcgagaagcttttgcgagcaggtatgaacgttg |
32421780 |
T |
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| Q |
227 |
ctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgc |
318 |
Q |
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| T |
32421779 |
ccagattcaacttctctcatggttctcatgactatcatcaggaaactcttgataatcttagagctgctatggagaataccggaattctctgc |
32421688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 314
Target Start/End: Complemental strand, 40599082 - 40598897
Alignment:
| Q |
129 |
agagaagaaacccaaaacaaagatcgtgtgcacgctgggacctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttgct |
228 |
Q |
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|||||||||||| ||||| |||||||| |||||||||||||| ||||| |||||| |||| ||||| ||||||||| | | |||||| ||||| ||||| |
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| T |
40599082 |
agagaagaaaccgaaaactaagatcgtttgcacgctgggacccgcatctaggtctattcccatggtcgagaagcttttgcgagcaggtatgaacgttgcc |
40598983 |
T |
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| Q |
229 |
cgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgctatgcaaaataccggtattct |
314 |
Q |
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| T |
40598982 |
agattcaacttctctcacggttctcatgactatcatcaggaaactcttgataatcttagagccgccatggagaatactggtattct |
40598897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 69835 - 69923
Alignment:
| Q |
196 |
gagaagcttctacaagcaggcatgaatgttgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatct |
284 |
Q |
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||||||||||| |||| || |||||||||||||||||||| ||||| |||||| | || |||||||||||||||| ||||||||||| |
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| T |
69835 |
gagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatct |
69923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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