View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_high_5 (Length: 624)
Name: NF12921_high_5
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 7622119 - 7622724
Alignment:
| Q |
1 |
agaccattagactccgtcaatacaaagttaacattttatgtgcgtaaactagatatactctgcaactcgtgtgcagctaatctctcgaaccagatagaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622119 |
agaccattagactccgtcaatacaaagttaacattttatgtgtgtaaactagatatactctgcaactcgtgtgcagctaatctctcgaaccagatagaat |
7622218 |
T |
|
| Q |
101 |
tgtagtaacaggtggcaaaattcttccgaatacatataagatgaagcatattagttattacaagtctcttttaatcacagtatataccttcccaaattac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622219 |
tgtagtaacaggtggcaaaattcttccgaatacatataagatgaagcatattagttattacaagtctcttttaatcacagtatataccttcccaaattac |
7622318 |
T |
|
| Q |
201 |
taatgaacccattatcaattgatctagaaatacaaactttgaggcatgcaaataacataactaactgtcaatagtacacatcctatatttttcttttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7622319 |
taatgaacccattatcaattgatctagaaatacaaactttgaggcatgcaaataacataactaactgtcaatagtacacatcctatgtttttcttttcat |
7622418 |
T |
|
| Q |
301 |
aggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaaccatgaggcagattccaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622419 |
aggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaaccatgaggcagattccaa |
7622518 |
T |
|
| Q |
401 |
tcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaatcaact |
500 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622519 |
tcaaaagattgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaatcaact |
7622618 |
T |
|
| Q |
501 |
caaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggccca |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622619 |
caaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggccca |
7622718 |
T |
|
| Q |
601 |
tgcatt |
606 |
Q |
| |
|
|||||| |
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| T |
7622719 |
tgcatt |
7622724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 188 - 606
Target Start/End: Original strand, 7633988 - 7634411
Alignment:
| Q |
188 |
cttcccaaattactaatgaacccattatcaattgatctagaaata---caaactttgaggcatgcaaataacataactaactgtcaatagtacacat--c |
282 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || | |
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| T |
7633988 |
cttcccaaattacaaatgaaaccattatcaattgatctagaaataatacaaactttgaggcatgcaaataacataactaattgtcaatagtacatatatc |
7634087 |
T |
|
| Q |
283 |
ctatatttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaa |
382 |
Q |
| |
|
|||| |||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
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| T |
7634088 |
ctatggttttcttttcctaggaaaaaggcaaagatcaattttcttatgcatagttattcctggtttcacttttgtatccaacacttgttccttgtcaaaa |
7634187 |
T |
|
| Q |
383 |
ccatgaggcagattccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccac |
482 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7634188 |
ccatgaggcaacttccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccac |
7634287 |
T |
|
| Q |
483 |
ttccaaatggaatcaactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttcagggtcattccaattctcagg |
582 |
Q |
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||||||||||||| | ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7634288 |
ttccaaatggaattagctcaaaatttttccctttaaagtccactgaactcataatgaacctttcaggataaaactcttcagggtctttccaattctcagg |
7634387 |
T |
|
| Q |
583 |
atcccttgctatggcccatgcatt |
606 |
Q |
| |
|
||||||| |||||||||||||||| |
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|
| T |
7634388 |
atcccttcctatggcccatgcatt |
7634411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 289 - 606
Target Start/End: Original strand, 7626958 - 7627275
Alignment:
| Q |
289 |
ttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaaccatga |
388 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7626958 |
ttttcttttcttaggaacaaggtaaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccaacacttgttccttgtcaaaaccatga |
7627057 |
T |
|
| Q |
389 |
ggcagattccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaa |
488 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627058 |
ggcagcttccagtcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaa |
7627157 |
T |
|
| Q |
489 |
atggaatcaactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatccct |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627158 |
atggaatcaactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatccct |
7627257 |
T |
|
| Q |
589 |
tgctatggcccatgcatt |
606 |
Q |
| |
|
|||||||||||||||||| |
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| T |
7627258 |
tgctatggcccatgcatt |
7627275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 464 - 555
Target Start/End: Complemental strand, 22941586 - 22941495
Alignment:
| Q |
464 |
ggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaa |
555 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| || || ||| |||| || ||||| ||| ||||||||||||||||| |
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| T |
22941586 |
ggacacattcttcttccagcaccaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaa |
22941495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 464 - 516
Target Start/End: Complemental strand, 22916886 - 22916834
Alignment:
| Q |
464 |
ggacacattcttcttccacttccaaatggaatcaactcaaaattcttcccttt |
516 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
22916886 |
ggacacattcttctgccactgccaaacggaatgaactcaaaattattaccttt |
22916834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 464 - 516
Target Start/End: Original strand, 22932201 - 22932253
Alignment:
| Q |
464 |
ggacacattcttcttccacttccaaatggaatcaactcaaaattcttcccttt |
516 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
22932201 |
ggacacattcttctgccactgccaaacggaatgaactcaaaattattaccttt |
22932253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 606
Target Start/End: Original strand, 22986263 - 22986407
Alignment:
| Q |
462 |
caggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttc |
561 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||| |||||||||| | ||||| ||||| | ||||| ||| ||||| ||||||||||||| || |
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| T |
22986263 |
caggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatc |
22986362 |
T |
|
| Q |
562 |
agggtcattccaattctcaggatcccttgctatggcccatgcatt |
606 |
Q |
| |
|
||||||||||||| | |||||||| | | |||||||| ||||| |
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|
| T |
22986363 |
ggggtcattccaatatttaggatcccgtccaatggcccaagcatt |
22986407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 607
Target Start/End: Original strand, 23610280 - 23610348
Alignment:
| Q |
539 |
aacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattt |
607 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| | |||||||||| |||| ||||| |||||| |
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|
| T |
23610280 |
aacctttcaggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcattt |
23610348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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