View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_high_6 (Length: 562)
Name: NF12921_high_6
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 34724824 - 34724413
Alignment:
| Q |
18 |
gttttgagattagtagagtatgatatggataaatggtggtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataaatc |
117 |
Q |
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| T |
34724824 |
gttttgagattagtagagtatgatatggataaatggtggtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataaatc |
34724725 |
T |
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| Q |
118 |
tctcgagggagagttatgccaccaattatgattctacggacccaacttgagggattagtttttatagtaatgcatagaagatacatagtttacatnnnnn |
217 |
Q |
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| T |
34724724 |
tcttgagggagagttatgccaccaattatgattctgcgga--------------ttagtttttatagtaatgcatagaagatacatagtttacatataaa |
34724639 |
T |
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| Q |
218 |
nn------gtccaatttacttcacggctatcaaataaatctctcggtcaagtccaaacatcagacacatgtgcaaagttaaaggttgaagcaggctattc |
311 |
Q |
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| T |
34724638 |
aaaaaaaagtccaatttacttcacggctatcaaataaatctctcggtcaagtccaaacatcagacacatgtgcaaagttaaaggttgaagcagtctattc |
34724539 |
T |
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| Q |
312 |
aaggacgaagtatcaaggaagaagtatagctacttagcaccttcgtagttactaaaaggtatagttgaaaacagagta-aggaatgcatctaaaaatttg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||||||| |
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| T |
34724538 |
aaggacgaagtatcaaggaagaagtatagctacttagcaccttcgtagttactaaaaggtatagttggaaaaagagtataaaaatgcatctaaaaatttg |
34724439 |
T |
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| Q |
411 |
taggcggttttatatttaaggacaaa |
436 |
Q |
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| T |
34724438 |
tagacggttttatatttaaggacaaa |
34724413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 35300986 - 35300941
Alignment:
| Q |
393 |
aatgcatctaaaaatttgtaggcggttttatatttaaggacaaata |
438 |
Q |
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| T |
35300986 |
aatgcatctaaaaatttgtagaaggtcttgtatttaaggacaaata |
35300941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 11680653 - 11680588
Alignment:
| Q |
371 |
tatagttgaaaacagagtaaggaatgcatctaaaaatttgtaggcggttttatatttaaggacaaa |
436 |
Q |
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|||||||||||| | ||||| ||||||||||| ||||||||| | | ||||||||||||||||| |
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| T |
11680653 |
tatagttgaaaaaaaagtaaagaatgcatctagaaatttgtaaatgatcttatatttaaggacaaa |
11680588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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