View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12921_low_10 (Length: 409)
Name: NF12921_low_10
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 24 - 393
Target Start/End: Original strand, 45081917 - 45082287
Alignment:
| Q |
24 |
aatggagttcatataaaatggatcagtaaaatagtggtattattcattacttttcaaaacttaaattccttatatatactatatccttatggaagaaaat |
123 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
45081917 |
aatggcgtgcatataaaatggatcagtaaaatagtggtattattcattacttttcaaaacttagattcc----atatactatatccttatggaagaaaat |
45082012 |
T |
|
| Q |
124 |
agcatttgatgtcctaacaacaataccattaaa-ctccctcnnnnnnnnnnnnn----caatagcattaaagttcaaattttacatccacattatcagaa |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
45082013 |
agcatttgatgtcctaacaacaatagcattaaagctccctcaaaaaaaaaaaaaaaaacaatagcattaaatttcaatttttacatccacattatcagaa |
45082112 |
T |
|
| Q |
219 |
gacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttccttctctttcagcagttca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45082113 |
gacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctcttggaaaaggacattcaatttccttctctttcagcagttca |
45082212 |
T |
|
| Q |
319 |
catggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgca |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45082213 |
catggtttaggaaccacattacttgtaactccagaaatatcagtgcaattccatggaagtttcttcttatgtgca |
45082287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 179 - 393
Target Start/End: Original strand, 45077777 - 45077991
Alignment:
| Q |
179 |
atagcattaaagttcaaattttacatccacattatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgt |
278 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
45077777 |
atagcattaaaattaaaattttacatccatgttatcagaagacactactttggaagttacaagtcttgaattgaacattttcgatggctagtttatctgt |
45077876 |
T |
|
| Q |
279 |
tggaaaaggacattcaatttccttctctttcagcagttcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
45077877 |
tggaaaaggacattcaatttccttctcttgcagcaattcacatggtttaggaaccacattacttgtaactccagaaatatcagtgcaattccatggaagt |
45077976 |
T |
|
| Q |
379 |
ttcttcttatgtgca |
393 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45077977 |
ttcttcttatgtgca |
45077991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 201 - 393
Target Start/End: Original strand, 45067008 - 45067201
Alignment:
| Q |
201 |
acatccacattatcagaagacacta-ctttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttc |
299 |
Q |
| |
|
||||||| ||||||| |||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45067008 |
acatccatattatcataagacattaactttgaaagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcgatttt |
45067107 |
T |
|
| Q |
300 |
cttctctttcagcagttcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgca |
393 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| || ||||| |||||| |
|
|
| T |
45067108 |
cttctctggcagcatatcacatggtttaggaaccgcattacttgcaactccagaaacatcagtgcaattccatggaagattattcttctgtgca |
45067201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 219 - 393
Target Start/End: Original strand, 45074584 - 45074761
Alignment:
| Q |
219 |
gacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaa---tttccttctctttcagcagt |
315 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||| ||||| | |
|
|
| T |
45074584 |
gacactacttttgaagttacaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaaatttttctttctctgccagcaat |
45074683 |
T |
|
| Q |
316 |
tcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttcttatgtgca |
393 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45074684 |
tcacagggtgtaggactcacattacttgtaactccagaaacatcagtgcaattccatggaagtttcttcttatgtgca |
45074761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 178 - 358
Target Start/End: Original strand, 12697949 - 12698128
Alignment:
| Q |
178 |
aatagcattaaagttcaaattttacatccacattatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctg |
277 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||| |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
12697949 |
aatagcattaaagttcaa-ttatacatccatgttaatagaagacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactg |
12698047 |
T |
|
| Q |
278 |
ttggaaaaggacattcaatttccttctctttcagcagttcacatggtttaggaaccacattacttgtaactccagaaacat |
358 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12698048 |
ttggaaaaggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaacat |
12698128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 210 - 386
Target Start/End: Original strand, 34504344 - 34504520
Alignment:
| Q |
210 |
ttatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttccttctctttc |
309 |
Q |
| |
|
||||||||| |||||||||| | ||| ||||||||||||||||||| |||||| | | ||||||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
34504344 |
ttatcagaacacactacttttaatgttacaagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaattttcttctctgac |
34504443 |
T |
|
| Q |
310 |
agcagttcacatggtttaggaaccacattacttgtaactccagaaacatcagtacaattccatggaagtttcttctt |
386 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
34504444 |
agcagatcacatggtttaggaaccacattacttgtaactccagaaacatctgtgcaattccatggaagtttcttctt |
34504520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University