View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_low_15 (Length: 288)
Name: NF12921_low_15
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 81 - 279
Target Start/End: Complemental strand, 2646187 - 2645986
Alignment:
| Q |
81 |
ttgtcacataatcttcaatcatgttatctactagagtgctctataatgtcaacctcacaacttgctttgtagttttcatagaagttaatccataacttca |
180 |
Q |
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| T |
2646187 |
ttgtcacataatcttcaatcatgttatctactagagtgctctataatgtcaacctcacaacttgctttgtagttctcaaagaagttaatccgtaacttca |
2646088 |
T |
|
| Q |
181 |
attattttttatatttgttcatatcttataataagaagactactagctagaaatctagttactacctactatcattcacaaa---ttgtgcattagaata |
277 |
Q |
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| T |
2646087 |
attattttttatatttgttcatatcttataataagaagacttctagctagaaatctagttactacctactatcattcacaaactcttgcgcattagaata |
2645988 |
T |
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| Q |
278 |
at |
279 |
Q |
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|| |
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| T |
2645987 |
at |
2645986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2646324 - 2646239
Alignment:
| Q |
1 |
tcatttctaatattccccctcatttttctttcactcacatctaatcttccaaaattttctattattcaacaatgttactcttgtca |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2646324 |
tcatttctaatattccccctcatttttctttcactcacatctaatcttccaaaattttctattattcaacaatgttaatcttgtca |
2646239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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