View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_low_17 (Length: 251)
Name: NF12921_low_17
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_low_17 |
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| [»] scaffold0133 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 11982956 - 11983177
Alignment:
| Q |
19 |
tttccaactgtcatgtagtttttctcactgccatgtaccttcacaacttgnnnnnnnccccctctgtcatagttttccacactgtgcactaattattttt |
118 |
Q |
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| T |
11982956 |
tttccaactgtcatgtagtttttctcactgccatgtaccttcacaacttgtttttttccccctctgtcatagttttccacactgtgcactaattattttt |
11983055 |
T |
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| Q |
119 |
gtctataggagccaactttgaatagttgcaggagaactacatccactgatttaatagacaaataataacgcatatttcatcttcatagagcaaagtcatc |
218 |
Q |
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| T |
11983056 |
gtctataggagccaactttgaatagttgcaggagaactgcatccactgatttaatagacaaataataacgcatatttcatcttcatagagcaaagtcatc |
11983155 |
T |
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| Q |
219 |
tccaatccaaaccacgattcat |
240 |
Q |
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| T |
11983156 |
tccaatccaaaccacgattcat |
11983177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 9576 - 9522
Alignment:
| Q |
176 |
acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac |
230 |
Q |
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| T |
9576 |
acaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaac |
9522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 13924 - 13870
Alignment:
| Q |
176 |
acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac |
230 |
Q |
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| T |
13924 |
acaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaac |
13870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 9662 - 9591
Alignment:
| Q |
105 |
cactaattattt--ttgtctataggagccaactttgaatagttgcaggagaactacatccactgatttaata |
174 |
Q |
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| T |
9662 |
cactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaata |
9591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 16782174 - 16782120
Alignment:
| Q |
176 |
acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac |
230 |
Q |
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| T |
16782174 |
acaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaac |
16782120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 38938402 - 38938439
Alignment:
| Q |
142 |
agttgcaggagaactacatccactgatttaatagacaa |
179 |
Q |
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| T |
38938402 |
agttgcagaagaactacatccactgatttaatagacaa |
38938439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 38938462 - 38938512
Alignment:
| Q |
189 |
catatttcatcttcatagagcaaagtcatctccaatccaaaccacgattcat |
240 |
Q |
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| T |
38938462 |
catatttcatcttcctagagcaaag-catctccaatccaaaccttgattcat |
38938512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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