View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12921_low_18 (Length: 236)

Name: NF12921_low_18
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12921_low_18
NF12921_low_18
[»] chr2 (7 HSPs)
chr2 (62-170)||(17364372-17364479)
chr2 (84-172)||(20376334-20376422)
chr2 (92-166)||(21690863-21690936)
chr2 (92-170)||(17840538-17840615)
chr2 (92-154)||(25867858-25867919)
chr2 (92-170)||(40584706-40584783)
chr2 (92-140)||(30948053-30948101)
[»] chr1 (7 HSPs)
chr1 (70-170)||(51111004-51111103)
chr1 (70-170)||(24549934-24550033)
chr1 (93-170)||(4649693-4649769)
chr1 (70-170)||(14911063-14911162)
chr1 (92-161)||(12301253-12301322)
chr1 (92-158)||(25124176-25124241)
chr1 (114-170)||(951047-951103)
[»] chr4 (3 HSPs)
chr4 (65-166)||(17870871-17870971)
chr4 (72-170)||(13959667-13959763)
chr4 (109-158)||(11426539-11426587)
[»] scaffold0259 (1 HSPs)
scaffold0259 (62-170)||(20086-20193)
[»] chr6 (5 HSPs)
chr6 (74-170)||(32669348-32669443)
chr6 (70-152)||(12464805-12464885)
chr6 (92-157)||(10374144-10374208)
chr6 (92-158)||(2944755-2944820)
chr6 (92-160)||(31136034-31136103)
[»] chr5 (2 HSPs)
chr5 (74-170)||(15117485-15117580)
chr5 (70-166)||(14053302-14053397)
[»] chr8 (8 HSPs)
chr8 (101-166)||(1444845-1444909)
chr8 (92-168)||(16207793-16207868)
chr8 (92-158)||(14424313-14424380)
chr8 (92-171)||(28847833-28847911)
chr8 (92-170)||(38801626-38801703)
chr8 (108-160)||(32343280-32343332)
chr8 (108-160)||(32355767-32355819)
chr8 (108-160)||(32359886-32359938)
[»] chr7 (4 HSPs)
chr7 (92-158)||(6628581-6628646)
chr7 (92-158)||(5299849-5299914)
chr7 (94-170)||(10259515-10259590)
chr7 (92-152)||(11917728-11917787)
[»] chr3 (5 HSPs)
chr3 (128-170)||(23432511-23432553)
chr3 (92-166)||(10081704-10081777)
chr3 (92-166)||(10188629-10188702)
chr3 (92-158)||(35510971-35511036)
chr3 (92-166)||(8146932-8147007)
[»] scaffold0533 (1 HSPs)
scaffold0533 (92-170)||(2457-2534)
[»] scaffold0062 (1 HSPs)
scaffold0062 (114-166)||(1500-1552)
[»] scaffold0072 (1 HSPs)
scaffold0072 (107-159)||(19258-19309)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 17364479 - 17364372
Alignment:
Q  62 tgttgggttttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcata 161  Q
    ||||||||||| |||| |||||||| ||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  17364479 tgttgggtttt-tagacatgtgttggctacatttttttaaaacaatagttctaggaagatgttagacaagatgtcttaaacatgttggtactacatcata 17364381  T
Q  162 acgtgcctt 170  Q
     ||||||||    
T  17364380 gcgtgcctt 17364372  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 20376334 - 20376422
Alignment:
Q  84 ttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgccttaa 172  Q
    ||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  20376334 ttgcctacattttgttaaaacaattgttctagtaagatgttagacaagatgtcttaaacatgttggtacgacatcatagcatgccttaa 20376422  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 21690863 - 21690936
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtg 166  Q
    |||||||| ||||||  |||||||||||||||| ||| |||||||||  |||||||||||| |||||||| ||||    
T  21690863 attttgttaaaacaagtgttctagcaagatgttggactagatgtctt-gacatgttggtacaacatcatagcgtg 21690936  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 17840538 - 17840615
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||||||| ||||||  ||||||||||||||||  | ||||||| || | ||||||||||||||||| || ||||||||    
T  17840538 attttgttaaaacaagtgttctagcaagatgttgaataagatgttttga-catgttggtacgacatcgtagcgtgcctt 17840615  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 25867919 - 25867858
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacga 154  Q
    |||||||| ||||||  ||||| |||||||||| |||||||||||||  ||||||||||||||    
T  25867919 attttgttaaaacaagtgttctggcaagatgttggacaagatgtctt-tacatgttggtacga 25867858  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 40584706 - 40584783
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    ||||| || ||||||  |||||||||||||||| |||||||||||||  |||||| ||||||||||  || ||||||||    
T  40584706 atttttttaaaacaaatgttctagcaagatgttggacaagatgtctt-gacatgtaggtacgacattgtagcgtgcctt 40584783  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 30948101 - 30948053
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaa 140  Q
    |||||||| ||||| |||| |||||||||||| ||||| ||||||||||    
T  30948101 attttgttaaaacattagtcctagcaagatgtcagacatgatgtcttaa 30948053  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 51111103 - 51111004
Alignment:
Q  70 tttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcct 169  Q
    |||||||| ||||||||  || |||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||    
T  51111103 tttgtagacatgtgttggttacattttgttaaaacaatagttctagcaagatgtcagacaagatgtctt-aacctgttggtacgacatcatagcgtgcct 51111005  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 24550033 - 24549934
Alignment:
Q  70 tttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcct 169  Q
    |||||||| |||  ||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||||    
T  24550033 tttgtagacatgcattggctacattttgttaaaacaatagttctagcaagatgtcagacaagatgtctt-aacattttggtacgacatcatagcgtgcct 24549935  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 4649693 - 4649769
Alignment:
Q  93 ttttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    ||||||| ||||||  ||||||| |||||||| |||||||||||||  ||||||||||||| ||||||||||| ||||    
T  4649693 ttttgttaaaacaagtgttctagtaagatgttggacaagatgtctt-gacatgttggtacggcatcataacgtacctt 4649769  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 14911063 - 14911162
Alignment:
Q  70 tttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcct 169  Q
    ||||||||  ||||||| ||  |||||||| |||||| ||||||||||||||||  ||  | |||||||  ||||||||||||||||||| | |||||||    
T  14911063 tttgtagacttgtgttggctgcattttgttaaaacaagagttctagcaagatgtcggaacaaatgtctt-gacatgttggtacgacatcacatcgtgcct 14911161  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 12301253 - 12301322
Alignment:
Q  92 attttgtttaaacaata-gttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcata 161  Q
    |||||||| |||||||| |||||||||||||||| ||| |||||||||  ||||||  |||||||||||||    
T  12301253 attttgttaaaacaatatgttctagcaagatgttggaccagatgtctt-gacatgtgagtacgacatcata 12301322  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 25124241 - 25124176
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatc 158  Q
    |||||||| ||||||  |||||| ||||||||| |||||||||||||  |||| |||||||||||||    
T  25124241 attttgttaaaacaaatgttctaacaagatgttggacaagatgtctt-gacatattggtacgacatc 25124176  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 951047 - 951103
Alignment:
Q  114 agcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||||||||| |||||  |||| ||||||| ||||||||||| ||||| ||||||||    
T  951047 agcaagatgtcagacacaatgttttaaacaagttggtacgacgtcatagcgtgcctt 951103  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 17870871 - 17870971
Alignment:
Q  65 tgggttttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacg 164  Q
    |||| |||||||| |||||||| ||| |||||||| |||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||||| ||    
T  17870871 tggggtttgtagacatgtgttggctacattttgttaaaacaataattctaggaagatgtcagacaagatgtctt-aacatgttggtacgacatcatagcg 17870969  T
Q  165 tg 166  Q
    ||    
T  17870970 tg 17870971  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 13959763 - 13959667
Alignment:
Q  72 tgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||||| |||||||| ||| |||||||| ||||||||| ||||||||||||| |||||||||||||| || |||||||||||| |||||| ||||||||    
T  13959763 tgtagacatgtgttgactacattttgttaaaacaatagctctagcaagatgtcagacaagatgtctt-aatatgttggtacga-atcatagcgtgcctt 13959667  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 11426539 - 11426587
Alignment:
Q  109 gttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatc 158  Q
    |||||||||||||||| ||||||||||| |  ||||||||||||||||||    
T  11426539 gttctagcaagatgttggacaagatgtc-tcgacatgttggtacgacatc 11426587  T

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Target: scaffold0259 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 20086 - 20193
Alignment:
Q  62 tgttgggttttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcata 161  Q
    |||||||||||||||| |||||||| ||| ||| || | |||||||||||| |||||||||| |||||||||||||| |||||||||||| ||||||| |    
T  20086 tgttgggttttgtagacatgtgttggctacattatgctaaaacaatagttccagcaagatgtcagacaagatgtctt-aacatgttggtatgacatcaca 20184  T
Q  162 acgtgcctt 170  Q
     ||||||||    
T  20185 gcgtgcctt 20193  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 32669443 - 32669348
Alignment:
Q  74 tagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||||||| ||||||||    
T  32669443 tagacatgtgttggctatattttgttaaaacaatagttctagcaaggtgtcagacaagatatctt-aacatgttggtgcgacatcatagcgtgcctt 32669348  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 12464885 - 12464805
Alignment:
Q  70 tttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtac 152  Q
    |||||||| |||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  12464885 tttgtagacatgtgttggctacattttgtt-aaacaatagttctagcaagatgtcagacaagatgt-tttaacatgttggtac 12464805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 10374144 - 10374208
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacat 157  Q
    |||||||| |||||   |||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  10374144 attttgttaaaacaggtgttctagcaagatgttggacaagatgtcct-aacatgttggtacgacat 10374208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 2944820 - 2944755
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatc 158  Q
    |||||||| ||||||  |||||| |||||| ||||||||||||||||  ||||||||||| ||||||    
T  2944820 attttgttaaaacaagtgttctaacaagatattagacaagatgtctt-gacatgttggtaagacatc 2944755  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 31136034 - 31136103
Alignment:
Q  92 attttgtttaaacaata-gttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcat 160  Q
    |||||||| |||||| | |||||||||||||||| ||| |||| || || ||||||| ||||||||||||    
T  31136034 attttgttaaaacaagatgttctagcaagatgttggaccagatttcctagacatgttagtacgacatcat 31136103  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 15117580 - 15117485
Alignment:
Q  74 tagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||| |||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||  |||||||    
T  15117580 tagacatgtgttggctacattttgttaaaacaatagttctagcaagatgtcagacaagatgtctt-aacatattggtatgacatcatagtgtgcctt 15117485  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 14053397 - 14053302
Alignment:
Q  70 tttgtagatatgtgttgcctatattttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtg 166  Q
    ||||||||  ||||||| ||  ||||||||||||||| | |||||||||||| |  || ||||||||||  ||||||||||||||||||||| ||||    
T  14053397 tttgtagacttgtgttggctgcattttgtttaaacaaaaattctagcaagatatcggataagatgtctt-gacatgttggtacgacatcatagcgtg 14053302  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 1444909 - 1444845
Alignment:
Q  101 aaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtg 166  Q
    ||||| ||||||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||||    
T  1444909 aaacattagttctagcaagatgtcagacacgatgtctt-aacacgttggtacgacatcataacgtg 1444845  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 16207793 - 16207868
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcc 168  Q
    |||||||| ||||||||||||||| ||||| | |||||||||||||| ||||||||||| | | |||||| ||||||    
T  16207793 attttgttaaaacaatagttctagaaagatttcagacaagatgtctt-aacatgttggtgcaatatcatagcgtgcc 16207868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 14424380 - 14424313
Alignment:
Q  92 attttgtttaaacaata-gttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatc 158  Q
    |||||||| |||||| | ||| |||||||||||| ||| ||||||| |||||||||| ||||||||||    
T  14424380 attttgttaaaacaagatgttatagcaagatgttggaccagatgtcctaaacatgttagtacgacatc 14424313  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 28847833 - 28847911
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctta 171  Q
    ||||| || |||||| ||||||||||||||||  ||||||  ||||| | ||||||||||| |||||||| |||||||||    
T  28847833 attttcttaaaacaagagttctagcaagatgtcggacaagtggtcttga-catgttggtacaacatcatagcgtgcctta 28847911  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 38801626 - 38801703
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||||||| ||||||  |||||||||| ||||| | |||||||||||  |||||||||||| ||||| || ||||||||    
T  38801626 attttgttaaaacaagtgttctagcaaaatgtttgtcaagatgtctt-gacatgttggtacaacatcgtagcgtgcctt 38801703  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 32343332 - 32343280
Alignment:
Q  108 agttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcat 160  Q
    ||||||| ||||||||| ||||||||||| | |||||||  ||||||||||||    
T  32343332 agttctaacaagatgttggacaagatgtcatgaacatgtgagtacgacatcat 32343280  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 32355819 - 32355767
Alignment:
Q  108 agttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcat 160  Q
    ||||||| ||||||||| ||||||||||| | |||||||  ||||||||||||    
T  32355819 agttctaacaagatgttggacaagatgtcatgaacatgtgagtacgacatcat 32355767  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 32359938 - 32359886
Alignment:
Q  108 agttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcat 160  Q
    ||||||| ||||||||| ||||||||||| | |||||||  ||||||||||||    
T  32359938 agttctaacaagatgttggacaagatgtcatgaacatgtgagtacgacatcat 32359886  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 6628581 - 6628646
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatc 158  Q
    |||||||| ||| ||  |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  6628581 attttgttaaaataagtgttctagcaagatgttggacaagatgtctt-aacatgttggtacgacatc 6628646  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 5299914 - 5299849
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatc 158  Q
    ||||| || ||||||  |||||||||||||||| |||||||||||||  ||||||||||| ||||||    
T  5299914 attttcttaaaacaagtgttctagcaagatgttggacaagatgtctt-gacatgttggtaagacatc 5299849  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 10259515 - 10259590
Alignment:
Q  94 tttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||||| ||| | |||||||| |||||||| ||| |  ||||||||| |||||||||||||||||||| ||| ||||    
T  10259515 tttgttaaaatattagttctaccaagatgtcagatataatgtcttaa-catgttggtacgacatcatagcgtacctt 10259590  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 11917728 - 11917787
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtac 152  Q
    |||||||| |||||||  ||||||||||||||| |||| ||||||||  ||||||||||||    
T  11917728 attttgttaaaacaattattctagcaagatgttggacaggatgtctt-gacatgttggtac 11917787  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 23432511 - 23432553
Alignment:
Q  128 caagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  23432511 caagatgtcttaaacatgttggtacgacatcatagcgtgcctt 23432553  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 10081704 - 10081777
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtg 166  Q
    |||||||| |||||| ||||||| ||||||||  |||||||||||||  |||||||||| |||||||||| ||||    
T  10081704 attttgttaaaacaagagttctaacaagatgtcggacaagatgtctt-gacatgttggtgcgacatcatagcgtg 10081777  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 10188629 - 10188702
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtg 166  Q
    |||||||| |||||| ||||||| ||||||||  |||||||||||||  |||||||||| |||||||||| ||||    
T  10188629 attttgttaaaacaagagttctaacaagatgtcggacaagatgtctt-gacatgttggtgcgacatcatagcgtg 10188702  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 35511036 - 35510971
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatc 158  Q
    |||||||| ||||||  ||| |||||||||||| |||||||||||||  ||||||||||||||||||    
T  35511036 attttgttaaaacaagtgttttagcaagatgttggacaagatgtctt-gacatgttggtacgacatc 35510971  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 8146932 - 8147007
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgt--tagacaagatgtcttaaacatgttggtacgacatcataacgtg 166  Q
    |||||||| ||||| |||||||||||||||||   ||||| ||||||||  |||||||||||||| |||||| ||||    
T  8146932 attttgttaaaacattagttctagcaagatgtcacagacacgatgtctt-gacatgttggtacgatatcatagcgtg 8147007  T

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Target: scaffold0533 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 2534 - 2457
Alignment:
Q  92 attttgtttaaacaatagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtgcctt 170  Q
    |||||||| ||||||  ||||||||||||||| ||| ||||| ||||  ||||||||||| ||||||| ||||||||||    
T  2534 attttgttaaaacaagtgttctagcaagatgtcagataagatatctt-gacatgttggtatgacatcacaacgtgcctt 2457  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 1500 - 1552
Alignment:
Q  114 agcaagatgttagacaagatgtcttaaacatgttggtacgacatcataacgtg 166  Q
    ||||| ||||||||||  ||||||||||||||||||||||||| |||| ||||    
T  1500 agcaatatgttagacacaatgtcttaaacatgttggtacgacaacatagcgtg 1552  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 19309 - 19258
Alignment:
Q  107 tagttctagcaagatgttagacaagatgtcttaaacatgttggtacgacatca 159  Q
    ||||| ||||||||||| |||||  ||||||||| ||||||||||||||||||    
T  19309 tagttatagcaagatgtcagacataatgtcttaa-catgttggtacgacatca 19258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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