View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12921_low_19 (Length: 234)

Name: NF12921_low_19
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12921_low_19
NF12921_low_19
[»] chr7 (5 HSPs)
chr7 (13-234)||(17695443-17695664)
chr7 (13-234)||(32659632-32659853)
chr7 (13-234)||(27714473-27714694)
chr7 (13-234)||(7887395-7887616)
chr7 (13-111)||(45115194-45115292)
[»] chr4 (5 HSPs)
chr4 (13-234)||(21582967-21583188)
chr4 (13-234)||(30388502-30388723)
chr4 (13-111)||(16908431-16908529)
chr4 (13-111)||(21382016-21382114)
chr4 (13-111)||(28388770-28388868)
[»] chr8 (6 HSPs)
chr8 (13-234)||(407509-407730)
chr8 (13-234)||(18267348-18267569)
chr8 (13-234)||(22730359-22730580)
chr8 (13-111)||(19960993-19961091)
chr8 (13-111)||(23827134-23827232)
chr8 (39-118)||(18287894-18287973)
[»] chr1 (7 HSPs)
chr1 (13-234)||(2048849-2049070)
chr1 (13-234)||(36868261-36868482)
chr1 (13-234)||(49788704-49788923)
chr1 (13-234)||(7479041-7479262)
chr1 (13-234)||(45504005-45504226)
chr1 (13-111)||(48650384-48650482)
chr1 (39-118)||(37902128-37902207)
[»] chr3 (12 HSPs)
chr3 (13-234)||(4592654-4592875)
chr3 (13-234)||(36088062-36088283)
chr3 (13-234)||(49562881-49563102)
chr3 (13-234)||(26946390-26946611)
chr3 (13-234)||(35715727-35715948)
chr3 (13-116)||(13456296-13456399)
chr3 (13-116)||(16650017-16650120)
chr3 (13-111)||(31486603-31486701)
chr3 (164-231)||(13456236-13456303)
chr3 (164-234)||(16650113-16650183)
chr3 (39-186)||(16472859-16473006)
chr3 (39-118)||(18206561-18206640)
[»] chr5 (11 HSPs)
chr5 (13-234)||(12653748-12653969)
chr5 (13-234)||(23182533-23182754)
chr5 (13-234)||(23186800-23187021)
chr5 (13-233)||(39876628-39876848)
chr5 (13-234)||(34759794-34760015)
chr5 (13-116)||(3609352-3609455)
chr5 (13-116)||(20106506-20106609)
chr5 (13-116)||(30091766-30091869)
chr5 (164-234)||(20106443-20106513)
chr5 (164-231)||(3609292-3609359)
chr5 (164-234)||(30091703-30091773)
[»] chr2 (8 HSPs)
chr2 (13-234)||(182662-182883)
chr2 (13-234)||(207153-207374)
chr2 (13-234)||(977433-977654)
chr2 (13-234)||(2299351-2299572)
chr2 (13-234)||(2447896-2448117)
chr2 (21-234)||(1272655-1272868)
chr2 (13-116)||(13903913-13904016)
chr2 (164-234)||(13904009-13904079)
[»] scaffold0642 (1 HSPs)
scaffold0642 (13-234)||(1929-2150)
[»] scaffold0345 (1 HSPs)
scaffold0345 (13-234)||(11840-12061)
[»] scaffold0105 (1 HSPs)
scaffold0105 (13-234)||(26919-27140)
[»] chr6 (5 HSPs)
chr6 (13-234)||(33047130-33047351)
chr6 (33-234)||(348886-349087)
chr6 (13-111)||(2280311-2280409)
chr6 (73-181)||(25000991-25001099)
chr6 (39-186)||(25002725-25002872)
[»] scaffold0119 (2 HSPs)
scaffold0119 (21-234)||(28223-28436)
scaffold0119 (21-234)||(34625-34838)
[»] scaffold0097 (1 HSPs)
scaffold0097 (13-110)||(52553-52650)
[»] scaffold0521 (1 HSPs)
scaffold0521 (52-118)||(643-709)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 17695443 - 17695664
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17695443 aaaaacaagccaatgatgtatgccaaatacactccaatctcagctgtttctgaaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 17695542  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17695543 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 17695642  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  17695643 aactaatgtcattgttgttttt 17695664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 32659632 - 32659853
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32659632 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaggaatctcaagatgtgtgtgcgagttgctcacatttggt 32659731  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  32659732 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctacatgtttgcactcttagctttaaaatta 32659831  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    ||||||||||||||||||||||    
T  32659832 aactaatgtcatcgttgttttt 32659853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 27714473 - 27714694
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27714473 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctatttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 27714572  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  27714573 tgattcgagagaacaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgaactcttagctttaaaatta 27714672  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  27714673 aactaatgtcattgttgttttt 27714694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 7887395 - 7887616
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7887395 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 7887494  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  7887495 tgattcgagaaaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 7887594  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  7887595 aagtaatgtcatttttgttttt 7887616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 45115194 - 45115292
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  45115194 aaaaacaagccaatgatctcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgagtgtgtgagttgctcacatttgg 45115292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 21583188 - 21582967
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21583188 aaaaacaagccaatgatgtatgccaaatacactccaatctcagctgtttctgaaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 21583089  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21583088 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 21582989  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  21582988 aactaatgtcattgttgttttt 21582967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 30388723 - 30388502
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30388723 aaaaacaagccaatgatgtctgtcaaatacactccaatctcagctgtttctggaggaagaaggaatctcaagatgtgtgtgcgagttgctcacatttggt 30388624  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  30388623 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctacatgtttgcactcttagctttaaaatta 30388524  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    ||||||||||||||||||||||    
T  30388523 aactaatgtcatcgttgttttt 30388502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 16908431 - 16908529
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16908431 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgagtgtgcgagttgctcacatttgg 16908529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 21382016 - 21382114
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21382016 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgtgagttgctcacatttgg 21382114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 28388770 - 28388868
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28388770 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgagtgtgcgagttgctcacatttgg 28388868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 407730 - 407509
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  407730 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 407631  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  407630 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 407531  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  407530 aactaatgtcattgttgttttt 407509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 18267569 - 18267348
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18267569 aaaaacaagccaatgatgtctaccaaatacactccaatctcagctatttctggatgaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 18267470  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  18267469 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 18267370  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  18267369 aagtaatgtcatttttgttttt 18267348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 22730580 - 22730359
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  22730580 aaaaacaagccaatgatgtctgccaaatacactcaaatctcagccgtttctgtaggaagaaagaatctcaagatgtgtgtgtgagttgctcacatttggt 22730481  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  22730480 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttttccatgtttgcactcttaactttaaaatta 22730381  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    ||||||||||||||||||||||    
T  22730380 aactaatgtcatcgttgttttt 22730359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 19960993 - 19961091
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19960993 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcaagttgctcacatttgg 19961091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 23827134 - 23827232
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  23827134 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaaactcaagatgagtgtgcgagttgctcacatttgg 23827232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 18287973 - 18287894
Alignment:
Q  39 atacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattc 118  Q
    |||||| ||| | |||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| ||||    
T  18287973 atacaccccactatcagctgtttctggaggaaggaagaacctgaagatgtgtgtgcgtgttgctcacatttggttaattc 18287894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 2049070 - 2048849
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2049070 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 2048971  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2048970 tgattcgagagaagaaggtccccgctagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 2048871  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  2048870 aactaatgtcattgttgttttt 2048849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 36868482 - 36868261
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36868482 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 36868383  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36868382 tgattcgagagaagaaggtccccgctagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 36868283  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  36868282 aactaatgtcattgttgttttt 36868261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 49788923 - 49788704
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  49788923 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtg--cgagttgctcacatttggt 49788826  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49788825 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 49788726  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  49788725 aactaatgtcattgttgttttt 49788704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 7479041 - 7479262
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7479041 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 7479140  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  7479141 tgattcgagaaaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 7479240  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  7479241 aagtaatgtcatttttgttttt 7479262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 45504226 - 45504005
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    ||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45504226 aaaaacaagtcaatgatgtctgctaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 45504127  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||    
T  45504126 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaagatttatgtatgtttgcactcttagctttaaaatta 45504027  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    ||||||||||||||||||||||    
T  45504026 aactaatgtcatcgttgttttt 45504005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 48650384 - 48650482
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48650384 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 48650482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 37902207 - 37902128
Alignment:
Q  39 atacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattc 118  Q
    |||||| ||| | |||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| ||||    
T  37902207 atacaccccactatcagctgtttctggaggaaggaagaacctgaagatgtgtgtgcgtgttgctcacatttggttaattc 37902128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 4592654 - 4592875
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592654 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 4592753  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  4592754 tgattcgagataagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttcagcatgtttgcactcttagctttaaaatta 4592853  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  4592854 aactaatgtcattgttgttttt 4592875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 36088283 - 36088062
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36088283 aaaaacaagccaatgatgtctgccaaatacactccaatcttagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 36088184  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  36088183 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 36088084  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  36088083 aactaatgtcatagttgttttt 36088062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 49563102 - 49562881
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49563102 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctagaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 49563003  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  49563002 tgattcgagagaagaaggtccccactagcataattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgtactcttagctttaaaatta 49562903  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    ||||||||||||||||||||||    
T  49562902 aactaatgtcatcgttgttttt 49562881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 26946390 - 26946611
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26946390 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 26946489  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  26946490 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 26946589  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  26946590 aagtaatgtcatttttgttttt 26946611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 35715727 - 35715948
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35715727 aaaaacaagccaatgatatctgccaaatacactccaatctcagctgtttctagaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 35715826  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  35715827 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttttgcatgtttgtactcttagctttaaaatta 35715926  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    ||||||||||||||||||||||    
T  35715927 aactaatgtcatcgttgttttt 35715948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 13456399 - 13456296
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13456399 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 13456300  T
Q  113 tgat 116  Q
    ||||    
T  13456299 tgat 13456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 16650017 - 16650120
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16650017 aaaaacaagctaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 16650116  T
Q  113 tgat 116  Q
    ||||    
T  16650117 tgat 16650120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 31486603 - 31486701
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31486603 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctatttctggaggaagaaagaatcttaagatgtgtgtgcgagttgctcacatttgg 31486701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 13456303 - 13456236
Alignment:
Q  164 tggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcatcgttgtt 231  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13456303 tggttgatgaaaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcattgttgtt 13456236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 16650113 - 16650183
Alignment:
Q  164 tggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcatcgttgttttt 234  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16650113 tggttgatgaaaaggtttctacatgtttgcactcttagctttaaaattaaactaatgtcattgttgttttt 16650183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 16473006 - 16472859
Alignment:
Q  39 atacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattcgagagaagaaggtctccagt 138  Q
    |||||| ||| | |||||| ||||||||||||  ||||| || |||||||||||||| |||||  |||||||||| |||| | ||||||| ||  | | |    
T  16473006 atacaccccactgtcagctatttctggaggaaagaagaacctgaagatgtgtgtgcgggttgcgtacatttggttaattccaaagaagaaagttccaact 16472907  T
Q  139 agcatcattttcatgaacatgttactggtcgatgagaaggtttctgca 186  Q
    | ||||||||||||||||||||| ||||| ||||  ||||||| ||||    
T  16472906 aacatcattttcatgaacatgttgctggttgatgcaaaggtttgtgca 16472859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 18206561 - 18206640
Alignment:
Q  39 atacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattc 118  Q
    |||||| ||| | |||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| ||||    
T  18206561 atacaccccactatcagctgtttctggaggaaggaagaacctgaagatgtgtgtgcgtgttgctcacatttggttaattc 18206640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 12653748 - 12653969
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12653748 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 12653847  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  12653848 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 12653947  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  12653948 aagtaatgtcatttttgttttt 12653969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 23182533 - 23182754
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23182533 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 23182632  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  23182633 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 23182732  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  23182733 aagtaatgtcatttttgttttt 23182754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 23186800 - 23187021
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23186800 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 23186899  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  23186900 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 23186999  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  23187000 aagtaatgtcatttttgttttt 23187021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 39876628 - 39876848
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39876628 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 39876727  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  39876728 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 39876827  T
Q  213 aactaatgtcatcgttgtttt 233  Q
    || |||||||||  |||||||    
T  39876828 aagtaatgtcatttttgtttt 39876848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 34759794 - 34760015
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34759794 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 34759893  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  34759894 tgattcgagaaaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 34759993  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  34759994 aagtaatgtcatttttgttttt 34760015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 3609455 - 3609352
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3609455 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 3609356  T
Q  113 tgat 116  Q
    ||||    
T  3609355 tgat 3609352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 20106609 - 20106506
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20106609 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatttcaagatgtgtgtgcgagttgctcacatttggt 20106510  T
Q  113 tgat 116  Q
    ||||    
T  20106509 tgat 20106506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 30091869 - 30091766
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30091869 aaaaacaagctaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 30091770  T
Q  113 tgat 116  Q
    ||||    
T  30091769 tgat 30091766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 20106513 - 20106443
Alignment:
Q  164 tggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcatcgttgttttt 234  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20106513 tggttgatgaaaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcattgttgttttt 20106443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 3609359 - 3609292
Alignment:
Q  164 tggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcatcgttgtt 231  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3609359 tggttgatgaaaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcattgttgtt 3609292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 30091773 - 30091703
Alignment:
Q  164 tggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcatcgttgttttt 234  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30091773 tggttgatgaaaaggtttctacatgtttgcactcttagctttaaaattaaactaatgtcattgttgttttt 30091703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 182662 - 182883
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182662 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 182761  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  182762 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 182861  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  182862 aagtaatgtcatttttgttttt 182883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 207153 - 207374
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  207153 aaaaacaagtcaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaggaatctcaagatgtgtgtgcgagttgctcacatttggt 207252  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  207253 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctatatgtttgcactcttagctttaaaatta 207352  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    ||||||||||||||||||||||    
T  207353 aactaatgtcatcgttgttttt 207374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 977654 - 977433
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  977654 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 977555  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  977554 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 977455  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  977454 aagtaatgtcatttttgttttt 977433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 2299351 - 2299572
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  2299351 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggatgaagaaagaatttcaagatgtgtgtgcgagttgctcacatttggt 2299450  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2299451 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttagtggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 2299550  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    |||||||||||| |||||||||    
T  2299551 aactaatgtcattgttgttttt 2299572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 2447896 - 2448117
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447896 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 2447995  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  2447996 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 2448095  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  2448096 aagtaatgtcatttttgttttt 2448117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 1272655 - 1272868
Alignment:
Q  21 gccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattcga 120  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  1272655 gccaatgatgtctgccaaatacactccaatctcaactgtttctggaggaagaaagaaccttaagatgtgtgtgtgagttgctcacatttggttgattcga 1272754  T
Q  121 gagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatg 220  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||    
T  1272755 gagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctacatgtttgcactcttaactttaaaattaaactaatg 1272854  T
Q  221 tcatcgttgttttt 234  Q
    ||||||||||||||    
T  1272855 tcatcgttgttttt 1272868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 13903913 - 13904016
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13903913 aaaaacaagccaatgatgtctgcaaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatatgtgtgcgagttgctcacatttggt 13904012  T
Q  113 tgat 116  Q
    ||||    
T  13904013 tgat 13904016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 13904009 - 13904079
Alignment:
Q  164 tggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcatcgttgttttt 234  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13904009 tggttgatgaaaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcattgttgttttt 13904079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 1929 - 2150
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1929 aaaaacaagccaatgatttttcccaaatacactccaatctcagctgtttctggatgaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 2028  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2029 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 2128  T
Q  213 aactaatgtcatcgttgttttt 234  Q
     ||||||||||| |||||||||    
T  2129 gactaatgtcattgttgttttt 2150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 11840 - 12061
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11840 aaaaacaagccaatgatttttcccaaatacactccaatctcagctgtttctggatgaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 11939  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11940 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 12039  T
Q  213 aactaatgtcatcgttgttttt 234  Q
     ||||||||||| |||||||||    
T  12040 gactaatgtcattgttgttttt 12061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 27140 - 26919
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27140 aaaaacaagccaatgatttttcccaaatacactccaatctcagctgtttctggatgaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 27041  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27040 tgattcgagagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttagctttaaaatta 26941  T
Q  213 aactaatgtcatcgttgttttt 234  Q
     ||||||||||| |||||||||    
T  26940 gactaatgtcattgttgttttt 26919  T

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Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 33047351 - 33047130
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 112  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33047351 aaaaacaagccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggt 33047252  T
Q  113 tgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaatta 212  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  33047251 tgattcgagaaaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctgcatgtttgcactcttaactttaaaatta 33047152  T
Q  213 aactaatgtcatcgttgttttt 234  Q
    || |||||||||  ||||||||    
T  33047151 aagtaatgtcatttttgttttt 33047130  T

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Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 348886 - 349087
Alignment:
Q  33 tgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattcgagagaagaaggtc 132  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  348886 tgccaaatacactccaatctcagctgtttctggagaaagaaagaacctcaagatgtgtgtgcgagttgctcacatttggttgattcgagagaagaaggtc 348985  T
Q  133 tccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatgtcatcgttgttt 232  Q
     ||| | ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  348986 cccactggcatcattttcatgaacatgttattggtcgatgaaaaggtttctacatgtttgcactcttggctttaaaattaaactaatgtcatcgttgatt 349085  T
Q  233 tt 234  Q
    ||    
T  349086 tt 349087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 2280311 - 2280409
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttgg 111  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2280311 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgagtgtgcgagttgctcacatttgg 2280409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 25000991 - 25001099
Alignment:
Q  73 aagaatctcaagatgtgtgtgcgagttgctcacatttggttgattcgagagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatg 172  Q
    ||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||| ||  | | || ||||||||||||||||||||| ||||| ||||    
T  25000991 aagaacctgaagatgtgtgtgcgggttgctcacatttggttaattccagagaagaaagttccaactaacatcattttcatgaacatgttgctggttgatg 25001090  T
Q  173 agaaggttt 181  Q
      |||||||    
T  25001091 caaaggttt 25001099  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 25002872 - 25002725
Alignment:
Q  39 atacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattcgagagaagaaggtctccagt 138  Q
    |||||| ||| | |||||| ||||||||||||  ||||| || |||||||||||||| |||||  |||||||||| |||| | ||||||| ||  | | |    
T  25002872 atacaccccactgtcagctatttctggaggaaagaagaacctgaagatgtgtgtgcgggttgcgtacatttggttaattccaaagaagaaagttccaact 25002773  T
Q  139 agcatcattttcatgaacatgttactggtcgatgagaaggtttctgca 186  Q
    | ||||||||||||||||||||| ||||| ||||  ||||||| ||||    
T  25002772 aacatcattttcatgaacatgttgctggttgatgcaaaggtttgtgca 25002725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 28436 - 28223
Alignment:
Q  21 gccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattcga 120  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  28436 gccaatgatgtctgccaaatacactccaatctcaactgtttctggaggaagaaagaaccttaagatgtgtgtgtgagttgctcacatttggttgattcga 28337  T
Q  121 gagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatg 220  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||    
T  28336 gagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctacatgtttgcactcttatctttaaaattaaactaatg 28237  T
Q  221 tcatcgttgttttt 234  Q
    ||||||||||||||    
T  28236 tcatcgttgttttt 28223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 34838 - 34625
Alignment:
Q  21 gccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattcga 120  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||| ||||||| ||    
T  34838 gccaatgatgtctgccaaatacactccaatctcagctgtttctggaggaagaaaaaaccttaagatgcgtgtgcgagttgctcacattttgttgatttga 34739  T
Q  121 gagaagaaggtctccagtagcatcattttcatgaacatgttactggtcgatgagaaggtttctgcatgtttgcactcttagctttaaaattaaactaatg 220  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||    
T  34738 gagaagaaggtccccactagcatcattttcatgaacatgttactggtcgatgaaaaggtttctacatgtttgcactcttaactttaaaattaaactaatg 34639  T
Q  221 tcatcgttgttttt 234  Q
    |||| |||||||||    
T  34638 tcattgttgttttt 34625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 52650 - 52553
Alignment:
Q  13 aaaaacaagccaattatgtatgccaaatacactccaatctcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttg 110  Q
    |||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  52650 aaaaacaagccaatgatgtcttccaaatacactccaatctcagctgtttctgaaggaagaaagaatctcaagatgtgtgttcgagttgctcacatttg 52553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 709 - 643
Alignment:
Q  52 tcagctgtttctggaggaagaaagaatctcaagatgtgtgtgcgagttgctcacatttggttgattc 118  Q
    |||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| ||||    
T  709 tcagctgtttctggaggaaggaagaacctgaagatgtgtgtgcgtgttgctcacatttggttaattc 643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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