View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_low_2 (Length: 823)
Name: NF12921_low_2
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 28202859 - 28203266
Alignment:
| Q |
17 |
atggaagagacagattcttcatcttcaacatctttgtcaaatcacaacaaaacttcttttggtactcgtttgaagatcaattgcttatcttttgccgttt |
116 |
Q |
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| T |
28202859 |
atggaagagacggattcttcatcttcaacatctttgccaaatcacaagaaaacttcttttggtactcgtttgaagattagttgcttatcttttgccgttt |
28202958 |
T |
|
| Q |
117 |
ctatacaagaaacttttagatatgtaaaagccttctttgttggtcaggtaattaattcaatatccaaaaacaacccatttccatttttagctactactta |
216 |
Q |
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| T |
28202959 |
ctatacaagaaacttttagatatgcaaaagccttctttgtaggtcaggtaattaattcaatatccaaaaacaacccctttccatttttagctactactta |
28203058 |
T |
|
| Q |
217 |
tttcaatattagtgttattttgaattttccttgtttggtgtgaaaaaataggcaaagactataactgcaaaaaatgagaaggaagcaagtgaagctgaac |
316 |
Q |
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| T |
28203059 |
tttcaatattagtgttattttgaattttccttgtttggtgtgaaaaaataggcaaagactataactgcaaaaaatgagaaggaagcaagtgaagctgaac |
28203158 |
T |
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| Q |
317 |
ttgaggcaacaaagaaacaagttgaggctgctgatgctgctgaacatatcaagaatagactcaatgatcctcatag-taattaattaaattaatgtttag |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
28203159 |
ttgaggctacaaagaaacaagttgaggctgctgatgctgctgaacatatcaagaatagactcaatgatcctcatagttagttaattaaattaatgtttag |
28203258 |
T |
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| Q |
416 |
taattttc |
423 |
Q |
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|||||||| |
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| T |
28203259 |
taattttc |
28203266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 605 - 813
Target Start/End: Original strand, 28203373 - 28203579
Alignment:
| Q |
605 |
atttgttgtgtttgcatctattgattagggagaagcaaagccaagacacgtgtgattcacagaaactctaagttatggttgagtgacacgcaactatatg |
704 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28203373 |
atttgttgtgtttgcatc-attgataagggagaagcaaagccaagacacgtgtgattcacagaaactctaagttatggttgagtgacacgcaactatatg |
28203471 |
T |
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| Q |
705 |
tgttggacaaatttaacatattattgacaacaaagaatattacttattttatctgtcttattatatgcctagtttaagattacacactacttttaaaaaa |
804 |
Q |
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| T |
28203472 |
tgttggacaaa-ttaacatattattgacaacacaaaatattacttattttatctgtcttattataagcctagtttaagattacacactacttttaaaaaa |
28203570 |
T |
|
| Q |
805 |
taccctatg |
813 |
Q |
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||||||||| |
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| T |
28203571 |
taccctatg |
28203579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 28197987 - 28198108
Alignment:
| Q |
17 |
atggaagagacagattcttcatcttcaacatctttgtcaaatcacaacaaaacttcttttggtactcgtttgaagatcaattgcttatcttttgccgttt |
116 |
Q |
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|||||||||| | |||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
28197987 |
atggaagagatgggttcttcatttacaacatctttgtcaaatcacaacaaaacttattttggtacttatttgaagaacaattgcttatcttttgtcgttt |
28198086 |
T |
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| Q |
117 |
ctatacaagaaacttttagata |
138 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
28198087 |
ctatacaagaaactttaagata |
28198108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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