View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12921_low_20 (Length: 225)
Name: NF12921_low_20
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_low_20 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 7621937 - 7622158
Alignment:
| Q |
4 |
tcaataacaaactttttagtaggtgtgtagactgtagtaataaaagtctaggcgttgttaataatctcaacttttggttttgacccaatttgattataac |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621937 |
tcaataacaaactttttagtaggtttgtagactgtagtaataaaagtctaggtgttgttaataatctcaacttttggttttgacccaatttgattataac |
7622036 |
T |
|
| Q |
104 |
gtgcaaagtggatttggtgtgcatgatagagacgaaaaatatttcaatagcacaaatttgaaggatttgccaaaatattgtgagaccattagactccgtc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7622037 |
gtgcaaagtggatttggtgtgcatgatagagacgaaaaatatttcaatagcacaaatttgaaggatttgccaaaatattgcaagaccattagactccgtc |
7622136 |
T |
|
| Q |
204 |
aatacaaagttaacattttatg |
225 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7622137 |
aatacaaagttaacattttatg |
7622158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 7626801 - 7626883
Alignment:
| Q |
82 |
tttgacccaatttgattataacgtgcaaagtggattt--ggtgtgcatgatagagacgaaaaatatttcaatagcacaaattt |
162 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||| | ||||||| ||||||| |||||| |||||||| ||||||||| |
|
|
| T |
7626801 |
tttgacccaatttgatcataatgtacaaagtggattttggttgtgcataatagagatgaaaaagatttcaatgacacaaattt |
7626883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University