View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_low_7 (Length: 505)
Name: NF12921_low_7
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Original strand, 8296706 - 8297179
Alignment:
| Q |
13 |
catcaagaaaaaatttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaactagacatagttataaaaccaaccta |
112 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
8296706 |
catcaagaaaaattttcagaatataacagacatagttttacatacttcaaacattgaagatgagtgacaggaaaccagacatagttataaaaccaaccta |
8296805 |
T |
|
| Q |
113 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctcaataagtaccatacaggaca |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8296806 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctgaataagtaccatacaggaca |
8296905 |
T |
|
| Q |
213 |
tgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatcttaaatacagagtttttcatgcttcaaactgaaattaacaaggc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8296906 |
tgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatgttaaatacagagtttttcatgcttcaaactgaaattaacaaggc |
8297005 |
T |
|
| Q |
313 |
aagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatactttctaagttccctt |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8297006 |
aagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatactttctaagttccctt |
8297105 |
T |
|
| Q |
413 |
ttaattccattctatcctcaatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaata |
486 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8297106 |
ttaattccattctatcctccatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaata |
8297179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 484
Target Start/End: Original strand, 8300283 - 8300755
Alignment:
| Q |
13 |
catcaagaaaaaatttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaactagacatagttataaaaccaaccta |
112 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
8300283 |
catcaagagaaatttttagaatataacagacatagttttacatacttcaaacattgaaaatgagtgacaggaaaccagacatagttataaaaccaaccta |
8300382 |
T |
|
| Q |
113 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctcaataagtaccatacaggaca |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
8300383 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctgaataattaccatacaggaca |
8300482 |
T |
|
| Q |
213 |
tgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatcttaaatacagagtttttcatgcttcaaac--------tgaaatt |
304 |
Q |
| |
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|| |||||| ||||||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||| |||||||| ||||||| |
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| T |
8300483 |
tggaattaggaatgcagaggttaacac-------catgagcaaaattttcagaatattaaagacagagtttttcattcttcaaactttgaaaatgaaatt |
8300575 |
T |
|
| Q |
305 |
aacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatactttctaa |
404 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| || ||||| ||| |||| | |||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
8300576 |
aacaaggcaagaaattttactcgagatagatctgcgtaaagatttcgagacacttcattttgtactccatagtttgcatttcaactctgatactttctga |
8300675 |
T |
|
| Q |
405 |
gttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaa |
484 |
Q |
| |
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||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| | |||||||||| |||||||| |
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|
| T |
8300676 |
gttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaa |
8300755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 174 - 487
Target Start/End: Complemental strand, 18279782 - 18279467
Alignment:
| Q |
174 |
aaactttttcagctccctcaataagtaccatacaggacatgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatcttaaa |
273 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| ||||| |
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|
| T |
18279782 |
aaactttttcagatccctgaataagtaccatacaggacatgaaattagctatgcagaggttaaca-------tcatgagcaatactttcagaatattaaa |
18279690 |
T |
|
| Q |
274 |
tacagagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaatccgcataa---agcttttgagaaaattcat |
362 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||| | ||||||| ||||||||||| |||||| |
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| T |
18279689 |
gacag--tttttcatgcttcaaactttgaaaatgaaattaacaagccaagaaattttactcgagataagtacgcataataaagcttttgagacaattcaa |
18279592 |
T |
|
| Q |
363 |
tttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagc |
462 |
Q |
| |
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||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
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|
| T |
18279591 |
attatcctccatagtttgcttttcaactttgacactttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagc |
18279492 |
T |
|
| Q |
463 |
atcaagtttttgaaatatctaatat |
487 |
Q |
| |
|
| ||| |||||| ||||| ||||| |
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|
| T |
18279491 |
gtaaagcttttgatatatccaatat |
18279467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 18279963 - 18279889
Alignment:
| Q |
13 |
catcaagaaaaaatttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaac |
87 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||| |
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|
| T |
18279963 |
catcaagagaaattttcagaatttaacagacatagttttgcatacttcaaactttgaagttgaggcacaggaaac |
18279889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 177 - 461
Target Start/End: Original strand, 1145074 - 1145356
Alignment:
| Q |
177 |
ctttttcagctccctcaataagtaccatacaggacatgaaattagcaatgcagaggttaacacttaacatcatgagcagaattttcagaatcttaaatac |
276 |
Q |
| |
|
||||| || |||||| ||||| ||||||||| |||||||||||||||| |||||||||| ||||| ||||| |||||||||||| ||||| | |
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|
| T |
1145074 |
cttttgcacctccctgaataattaccatacaagacatgaaattagcaaagcagaggtta--------catcaagagcaaaattttcagaatattaaa--c |
1145163 |
T |
|
| Q |
277 |
agagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttacc |
368 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| || |||||||| | |
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|
| T |
1145164 |
agagtttttcatgcttcaaactttgaaaatgaaattaaccaggcaagatattttactcgagataaatccgcataaagctttcgagccaaatcattttatc |
1145263 |
T |
|
| Q |
369 |
ctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcag |
461 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |
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|
| T |
1145264 |
ctccatagtttgcatttcaattctgatactttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcag |
1145356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 21120586 - 21120537
Alignment:
| Q |
368 |
cctccatagtttgcatttcaactctgatactttctaagttcccttttaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| | |||||| |
|
|
| T |
21120586 |
cctccatagtttgcatttcaactctgagactttccaagttctcgtttaat |
21120537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 21121004 - 21120969
Alignment:
| Q |
134 |
aaataaaaaccaccctacttcatgtttataagatga |
169 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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|
| T |
21121004 |
aaataaaaaccagcctacttcatgtttataagatga |
21120969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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