View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12921_low_8 (Length: 498)
Name: NF12921_low_8
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12921_low_8 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 41544542 - 41544063
Alignment:
| Q |
1 |
tatatatgatatacgagtattatcacagacacttcaaattaaaagtgtgtctgatcaatgtatgtgtacatctcagtgtgtgtccaatgtatgtattagc |
100 |
Q |
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| T |
41544542 |
tatatatgatatacgagtattatcacagacacttcagattaaaagtgtgtctgatcaatgtatgcgtacatctcagtgtgtgtccaatgtatgtattagc |
41544443 |
T |
|
| Q |
101 |
gtctgttgtgtgactgtgtcggtgcttcatataatataacaaacctgtttccaagaagtttgtgaagcctaataatcaaatcctcttcttcatctgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544442 |
gtctgttgtgtgactgtgtcggtgcttcatataatataacaaacctgtttccaagaagtttgtgaagcctaataatcaaatcctcttcttcatctgaaat |
41544343 |
T |
|
| Q |
201 |
gttccctctcttgatattgggtctaagatagttcaaccatcttagcctgcaactctttccacacctattcaaacctgcaaacaaaattgcagcacttact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544342 |
gttccctctcttgatattgggtctaagatagttcaaccatcttagcctgcaactctttccacacctattcaaacctgcaaacaaaattgcagcacttact |
41544243 |
T |
|
| Q |
301 |
ttggtttcaagtaacaacttttttcccctttcttttctaaacttgtaaatttttcacttgtgacttgtgagtagtaataaattaaaagaataacttttgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
41544242 |
ttggtttcaagtaacaacttttttcccctttcttttctaaacttgtaaatttttcacttgtgacttttgagtagtaa-----taaaagaataacttttgt |
41544148 |
T |
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| Q |
401 |
cttatcacctgaattgtttgcaacagttttccatttcttggcaccatgaatttggatgcattgtgctagcttttgatcttcctct |
485 |
Q |
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| T |
41544147 |
cttatcacctgaattgtttgcaacagttttccatttcttggcaccatgaatttggatgcattgtgctagcttttgatcttcctct |
41544063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 37807947 - 37807865
Alignment:
| Q |
203 |
tccctctcttgatattgggtctaagatagttcaaccatcttagcctgcaactctttccacacctattcaa-acctgcaaacaaa |
285 |
Q |
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| T |
37807947 |
tccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct-ttcaagacctgcaaacaaa |
37807865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 40843622 - 40843594
Alignment:
| Q |
25 |
acagacacttcaaattaaaagtgtgtctg |
53 |
Q |
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| T |
40843622 |
acagacacttcaaattaaaagtgtgtctg |
40843594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 2792051 - 2792089
Alignment:
| Q |
239 |
atcttagcctgcaactctttccacacctattcaaacctg |
277 |
Q |
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| T |
2792051 |
atcttagcctgcaactcttaccacacctattcaaccctg |
2792089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 5567 - 5600
Alignment:
| Q |
226 |
agatagttcaaccatcttagcctgcaactctttc |
259 |
Q |
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| T |
5567 |
agatagttcaaccatcttagcctacaactctttc |
5600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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