View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12921_low_9 (Length: 422)

Name: NF12921_low_9
Description: NF12921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12921_low_9
NF12921_low_9
[»] chr8 (4 HSPs)
chr8 (12-405)||(9589799-9590210)
chr8 (13-193)||(32238652-32238832)
chr8 (13-122)||(7177811-7177919)
chr8 (56-115)||(12314197-12314256)
[»] chr6 (1 HSPs)
chr6 (12-190)||(32974483-32974660)
[»] chr5 (2 HSPs)
chr5 (59-181)||(29529134-29529256)
chr5 (170-258)||(29529600-29529688)
[»] chr7 (1 HSPs)
chr7 (51-238)||(8755511-8755696)
[»] chr1 (2 HSPs)
chr1 (59-197)||(51691038-51691176)
chr1 (14-114)||(48503784-48503884)
[»] chr3 (1 HSPs)
chr3 (51-238)||(22618379-22618562)
[»] scaffold0248 (1 HSPs)
scaffold0248 (76-172)||(18284-18380)
[»] chr2 (2 HSPs)
chr2 (45-121)||(7347198-7347274)
chr2 (51-111)||(40937757-40937817)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 9589799 - 9590210
Alignment:
Q  12 atgagctaacatgccaaatttgcaaggattcttatcagtttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatgga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9589799 atgagctaacatgccaaatttgcaaggattcttatcagtttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatgga 9589898  T
Q  112 tctcgtacttctgaaccatgaattcacaaggaaaggaccaacatgttaccgattaaataaattaaaggacctatatgcatca-ttttcttatgaatacgg 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||| |    
T  9589899 tctcgtacttcagaaccatgaattcacaaggaaaggaccaacatgttaccgattaaataaattaaaggacctatatgcaccattttttttataaatacag 9589998  T
Q  211 gaccaatatgaaccccaaaataaagata---gaccaaaaagatgttaaagccttcgtattttgataaaatttattattcatttgagtccaattatcttgt 307  Q
    ||| |||||||||| | |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9589999 gactaatatgaacctcgaaataaagataagggaccaaaaagatgttaaagccttcgtattttgataaaatttattattcatttgagtccaattaacttgt 9590098  T
Q  308 ttgattcataggaaattcgtgaaattgatataatcacttcaatacaaaatttagct--------------ccagattccagccaactttcattagagaga 393  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||              |||||||||||||||||||||||||||| |    
T  9590099 ttgattcataggaaattcgtgaaattgatataatcacttcgctacaaaatttagctccatctttaataaaccagattccagccaactttcattagagaaa 9590198  T
Q  394 ctttgttaatac 405  Q
    ||||||||||||    
T  9590199 ctttgttaatac 9590210  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 32238652 - 32238832
Alignment:
Q  13 tgagctaacatgccaaatttgcaaggattcttatcagtttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggat 112  Q
    |||||||||| | ||||||  ||||| | || || ||||||| || ||||| |||| |||||||||||| || |||||| |||||  ||||  |||||||    
T  32238652 tgagctaacaggtcaaattcacaaggttcctcataagtttcctttttgaaaccgttgaacaatggtgcagagagtggatacaacacaaattcacatggat 32238751  T
Q  113 ctcgtacttctgaaccatgaattcacaaggaaaggaccaacatgttaccgattaaataaattaaaggacctatatgcatca 193  Q
    |||||||||| |||| ||||||||||| ||||||||  |||||  ||||  ||||  ||||  ||||||||||||||||||    
T  32238752 ctcgtacttcagaacaatgaattcacatggaaaggaataacatagtaccagttaatcaaatcgaaggacctatatgcatca 32238832  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 7177919 - 7177811
Alignment:
Q  13 tgagctaacatgccaaatttgcaaggattcttatcagtttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggat 112  Q
    |||||||||||| ||||||  | ||| |||| |||||||||| ||||||| |||| ||||||||| ||| | ||||||||||||| |||||  ||| |||    
T  7177919 tgagctaacatgtcaaattcacgaggtttctcatcagtttcctttctgaa-tcgtcaaacaatggcgcagaaggtggatccaacacgaattcacattgat 7177821  T
Q  113 ctcgtacttc 122  Q
    ||||||||||    
T  7177820 ctcgtacttc 7177811  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 12314197 - 12314256
Alignment:
Q  56 ttctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatctc 115  Q
    ||||||||||||| |||||||||||||||| |||||| ||||  |||| |||||||||||    
T  12314197 ttctgaaatcgttgaacaatggtgcaaaggatggatctaacacaaattcgcatggatctc 12314256  T

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Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 32974483 - 32974660
Alignment:
Q  12 atgagctaacatgccaaatttgcaaggattcttatcagtttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatgga 111  Q
    ||||||||||||||||||||||||||| |||||||||| || | | ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||    
T  32974483 atgagctaacatgccaaatttgcaaggtttcttatcagctttcttcctgaaatcgtttaacaatggtgcaaagggtggatccgacatgaattcgcatgga 32974582  T
Q  112 tctcgtacttctgaaccatgaattcacaaggaaaggaccaacatgttaccgattaaataaattaaaggacctatatgca 190  Q
    ||||||||||| ||||||  |||||||| ||||||||||||  || |||| |||||| ||| |||||||||||| ||||    
T  32974583 tctcgtacttcagaaccacaaattcacatggaaaggaccaatgtgctaccaattaaacaaa-taaaggacctatctgca 32974660  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 29529256 - 29529134
Alignment:
Q  59 tgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatctcgtacttctgaaccatgaattcacaaggaaaggaccaacatgtt 158  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||  |||||||||||||||||  ||||| |||||| || ||||||||||||| || |    
T  29529256 tgaaatcgttgaacaatggtgcaaagggtgcatccaacataaattcacatggatctcgtacttcaaaaccacgaattcgcatggaaaggaccaacgtggt 29529157  T
Q  159 accgattaaataaattaaaggac 181  Q
    ||| |||||| ||||||||||||    
T  29529156 accaattaaacaaattaaaggac 29529134  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 29529600 - 29529688
Alignment:
Q  170 aaattaaaggacctatatgcatcattttcttatgaatacgggaccaatatgaaccccaaaataaagata---gaccaaaaagatgttaaagc 258  Q
    |||||||||||||||| ||||    |||||| | |||| ||||||||||||||| ||||||||||||||   |||||||||| |||| ||||    
T  29529600 aaattaaaggacctatttgcac---tttcttttaaataagggaccaatatgaacaccaaaataaagataagggaccaaaaaggtgtttaagc 29529688  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 8755511 - 8755696
Alignment:
Q  51 ttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatctcgtacttctgaaccatgaattcacaaggaaaggacc 150  Q
    |||| ||||||||||||| |||| |  |||| |||||| ||||||||  ||||  |||||||||||||||||  || || |||||| |  |||||||||     
T  8755511 ttcctttctgaaatcgttgaacattaatgcagagggtgcatccaacacaaattcacatggatctcgtacttcaaaatcaagaattcgcctggaaaggact 8755610  T
Q  151 aacatgttaccgattaaataaattaaaggacctatatgcatcattttcttatgaatacgggaccaatatgaaccccaaaataaagata 238  Q
    |||||| |||| |||||  |||||||| ||| ||| |||||| |||| || | | || ||||||||||||||||  ||||||||||||    
T  8755611 aacatggtaccaattaagcaaattaaaagacttatctgcatcgtttt-ttgt-attaagggaccaatatgaaccttaaaataaagata 8755696  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 51691176 - 51691038
Alignment:
Q  59 tgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatctcgtacttctgaaccatgaattcacaaggaaaggaccaacatgtt 158  Q
    |||||| ||| ||||||| | || | |||||||||||||  ||||  |||||| |||||||||   |||| |||||||||| | ||||||||||  || |    
T  51691176 tgaaatagttgaacaatgatacacaaggtggatccaacacaaattcacatggaactcgtacttaaaaaccttgaattcacatgaaaaggaccaatgtgat 51691077  T
Q  159 accgattaaataaattaaaggacctatatgcatcatttt 197  Q
    ||| |||||| ||||||||||| |||| |||||| ||||    
T  51691076 accaattaaacaaattaaaggatctatttgcatcttttt 51691038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 48503884 - 48503784
Alignment:
Q  14 gagctaacatgccaaatttgcaaggattcttatcagtttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatc 113  Q
    ||||||||||| |||||||  |||| |||| ||||  || | || |||||||||| ||||||  |||||||||| |||||||||  ||||||||||||||    
T  48503884 gagctaacatgtcaaatttataaggtttctcatcaactttctttatgaaatcgttgaacaattatgcaaagggttgatccaacacaaatttgcatggatc 48503785  T
Q  114 t 114  Q
    |    
T  48503784 t 48503784  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 22618379 - 22618562
Alignment:
Q  51 ttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatctcgtacttctgaaccatgaattcacaaggaaaggacc 150  Q
    |||| |||||||||| || ||||||| |||| |||||||||||||||  || |  | |||||||||||||||  || |||||||||||| | ||| ||||    
T  22618379 ttcctttctgaaatcattgaacaatgatgcatagggtggatccaacagaaactcacttggatctcgtacttc-aaaacatgaattcacatgaaaaagacc 22618477  T
Q  151 aacatgttaccgattaaataaattaaaggacctatatgcatcattttcttatgaatacgggaccaatatgaaccccaaaataaagata 238  Q
     |  |  |||| |||||| |||||||| ||||||| |||| |||| | |||  |  | ||| ||||||||||||||||||||||||||    
T  22618478 tatgtaataccaattaaacaaattaaaagacctatttgca-cattatttta--ataaaggggccaatatgaaccccaaaataaagata 22618562  T

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Target: scaffold0248 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 18284 - 18380
Alignment:
Q  76 ggtgcaaagggtggatccaacatgaatttgcatggatctcgtacttctgaaccatgaattcacaaggaaaggaccaacatgttaccgattaaataaa 172  Q
    |||||||||| ||||||||| |  |||| | |||||||||||| |||  ||||| |||||| || ||||||||| ||  || |||| ||||||||||    
T  18284 ggtgcaaaggatggatccaaaacaaattcgtatggatctcgtatttcaaaaccacgaattcgcatggaaaggactaatgtgataccaattaaataaa 18380  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 7347198 - 7347274
Alignment:
Q  45 atcagtttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatctcgtactt 121  Q
    |||| ||||| |||| |||| ||| ||||||| |  | |||||||||||||||  |||| |||||||||||||||||    
T  7347198 atcattttcctttctaaaatagttgaacaatgatatagagggtggatccaacacaaattggcatggatctcgtactt 7347274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 40937817 - 40937757
Alignment:
Q  51 ttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatgga 111  Q
    |||| |||| |||||||| ||||||| |||| ||| |||||||||||  ||||||||||||    
T  40937817 ttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaatttgcatgga 40937757  T

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