View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12922_high_1 (Length: 619)

Name: NF12922_high_1
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12922_high_1
NF12922_high_1
[»] chr4 (4 HSPs)
chr4 (279-603)||(11412925-11413249)
chr4 (1-225)||(11413327-11413550)
chr4 (1-109)||(42460094-42460202)
chr4 (1-102)||(23149458-23149559)
[»] chr1 (2 HSPs)
chr1 (19-127)||(17377886-17377994)
chr1 (284-425)||(20807390-20807538)
[»] chr8 (1 HSPs)
chr8 (1-79)||(37340729-37340807)
[»] chr6 (2 HSPs)
chr6 (19-102)||(12384182-12384264)
chr6 (19-132)||(13312189-13312302)
[»] chr2 (2 HSPs)
chr2 (16-135)||(28528767-28528890)
chr2 (283-332)||(15029102-15029151)
[»] chr3 (2 HSPs)
chr3 (356-423)||(34875102-34875169)
chr3 (36-130)||(7958952-7959046)
[»] chr7 (5 HSPs)
chr7 (32-186)||(1086263-1086416)
chr7 (16-81)||(16319478-16319543)
chr7 (19-132)||(13120741-13120854)
chr7 (339-422)||(15598402-15598488)
chr7 (19-63)||(28243370-28243414)
[»] scaffold0064 (1 HSPs)
scaffold0064 (32-85)||(5247-5300)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 279 - 603
Target Start/End: Complemental strand, 11413249 - 11412925
Alignment:
Q  279 atcatactagatcgtgctcccgtgcttcacacgggtcaatgatgagcacaataagcatagtaaataaaaaataggttaaatataatatagttgaaacttg 378  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11413249 atcatactaaatcgtgctcccgtgcttcacacgggtcaatgataagcacaataagcatagtaaataaaaaataggttaaatataatatagttgaaacttg 11413150  T
Q  379 attaagagattacataagtaataataacattaattaacgaacattcttgataaaattcattagatagtttttccacttatcatcagtcacatggaataaa 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11413149 attaagagattacataagtaataataacattaattaacgaacattcttggtaaaattcattagatagtttttccacttatcatcagtcacatggaataaa 11413050  T
Q  479 aatcatattatgtcacagttagtagtttttgtatcagaggagcaaaatcgaaaaatgggtcattttattttatggagttttcaagcattacccacgttat 578  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  11413049 aatcatattatgtcagagttagtagtttttgtatcagaggaacaaaatcgaaaaatgggtcattttgttttatggagttttcaagcattacccacgtttt 11412950  T
Q  579 tatcaattcaagcatcatagccttt 603  Q
    |||||||||||||||||||||||||    
T  11412949 tatcaattcaagcatcatagccttt 11412925  T

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Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11413550 - 11413327
Alignment:
Q  1 tgaaaatttgaaaccgtaaaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  11413550 tgaaaatttgaaactgtaaaactgtaaaataggaggggtgattttccttatatatattgaagtagttcggattatataatccaaattgcatttcatattt 11413451  T
Q  101 tttcgaattttataatccgaagggcattttgggaaattctataggatgcgtgagtacctcatagggtggggaaaagtaatagtctaatataagaggtggg 200  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||||||||||||| ||    
T  11413450 tttcgaattttataatccgaaatgcattttgggaaattctataggatgcatgagtacctcata-ggacgggaaaagtaatagtctaatataagaggtagg 11413352  T
Q  201 attgtatcttaatacacaccaaatt 225  Q
    |||||||||||||||||||||||||    
T  11413351 attgtatcttaatacacaccaaatt 11413327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42460094 - 42460202
Alignment:
Q  1 tgaaaatttgaaaccgtaaaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattt 100  Q
    |||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||  |||||| ||||||||||| |||||    
T  42460094 tgaaaagttgaaactgtaaaactgtacaataggaggagtgattttccttatatatatcgaagcagttcagattacgtaatccaaattgcatttcgtattt 42460193  T
Q  101 tttcgaatt 109  Q
    || ||||||    
T  42460194 ttccgaatt 42460202  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23149458 - 23149559
Alignment:
Q  1 tgaaaatttgaaaccgtaaaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattt 100  Q
    |||||| ||||||| |||||||| |||||| |||||||||||||| |||||||||||| ||| |||||||||||  |||||||| ||||||||| |||||    
T  23149458 tgaaaagttgaaactgtaaaactttaaaatgggaggggtgatttttcttatatatatcaaagcagttcggattacgtaatccgagttgcatttcgtattt 23149557  T
Q  101 tt 102  Q
    ||    
T  23149558 tt 23149559  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 17377994 - 17377886
Alignment:
Q  19 aaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattttttcgaattttataatcc 118  Q
    ||||| |||||| ||||||||||  ||||||||||||| ||||| ||||| |||||  ||||||| | || ||||| ||||||| |||||| ||||||||    
T  17377994 aaactataaaatgggaggggtgaacttccttatatataccgaagaagttcagattacgtaatccggaatgtatttcgtatttttccgaattatataatcc 17377895  T
Q  119 gaagggcat 127  Q
    ||| |||||    
T  17377894 gaatggcat 17377886  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 425
Target Start/End: Complemental strand, 20807538 - 20807390
Alignment:
Q  284 actagatcgtgctcccgtgcttcacacgggtcaatgatgagcacaata----agcatagtaaataaaaaataggttaaatataatatagttgaaacttga 379  Q
    ||||||| ||||  ||||||||| ||||||  ||||||||||||||||    |||||| ||||| ||||  |  ||||||||||||   ||||||||  |    
T  20807538 actagattgtgcaaccgtgcttcgcacgggaaaatgatgagcacaatatatgagcataataaattaaaagcacattaaatataatactattgaaactcca 20807439  T
Q  380 ttaagagattacataag---taataataacattaattaacgaacattct 425  Q
    ||| || || |||| ||   |||||||||||||||||||||||||||||    
T  20807438 ttacgacatcacatgagtaataataataacattaattaacgaacattct 20807390  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 37340807 - 37340729
Alignment:
Q  1 tgaaaatttgaaaccgtaaaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataa 79  Q
    |||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||||| ||||| ||||    
T  37340807 tgaaaagttaaaactgtaaaactgtaaaatgggaggggtgattttccttatatatatcaatgcagttcagattacataa 37340729  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 12384264 - 12384182
Alignment:
Q  19 aaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattttt 102  Q
    |||||||||||| |||||| |||||||| ||||| ||||||||||||| |||||||  ||||||| | || |||||||||||||    
T  12384264 aaactgtaaaatgggagggatgattttc-ttataaatatcgaagtagtccggattacgtaatccggaatgtatttcatattttt 12384182  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 13312189 - 13312302
Alignment:
Q  19 aaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattttttcgaattttataatcc 118  Q
    |||||||||||| ||||||| ||  ||||||||||||||| |||||||  ||||||  ||||||  |||||||||| |||  ||| | ||||  ||||||    
T  13312189 aaactgtaaaatgggaggggcgaacttccttatatatatcaaagtagtctggattacgtaatccagattgcatttcgtatcattttggatttcgtaatcc 13312288  T
Q  119 gaagggcattttgg 132  Q
     |||||||||||||    
T  13312289 aaagggcattttgg 13312302  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 28528767 - 28528890
Alignment:
Q  16 gtaaaactgtaaaatagg---aggggtgattt-tccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattttttcgaatttt 111  Q
    ||||||||||||||| ||   ||||||||||| | ||||||||||||||||| |||| ||||||||||||||||     |||| |||| ||||| ||| |    
T  28528767 gtaaaactgtaaaattgggggaggggtgatttgttcttatatatatcgaagttgttccgattatataatccgaaccagttttcgtattatttcggattat 28528866  T
Q  112 ataatccgaagggcattttgggaa 135  Q
    |||||  |||||| ||||||||||    
T  28528867 ataatatgaagggtattttgggaa 28528890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 15029102 - 15029151
Alignment:
Q  283 tactagatcgtgctcccgtgcttcacacgggtcaatgatgagcacaataa 332  Q
    ||||||||||  |||||||||||| |||||||||||| ||| ||||||||    
T  15029102 tactagatcgcactcccgtgcttcgcacgggtcaatggtgaacacaataa 15029151  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 34875169 - 34875102
Alignment:
Q  356 aaatataatatagttgaaacttgattaagagattacataagtaataataacattaattaacgaacatt 423  Q
    |||||| ||||| |||||| || ||||  | ||||||| |||||||||||||||||||||||||||||    
T  34875169 aaatatgatataattgaaatttcattacaacattacatgagtaataataacattaattaacgaacatt 34875102  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 7959046 - 7958952
Alignment:
Q  36 gggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattttttcgaattttataatccgaagggcatttt 130  Q
    |||||||||| |||||||||||||||   ||  ||||| ||||||||||| |   |||| |||| ||||  |||| |||||||||||||||||||    
T  7959046 gggtgatttttcttatatatatcgaaaatgtcaggattttataatccgaactagctttcgtattatttcagatttcataatccgaagggcatttt 7958952  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 1086263 - 1086416
Alignment:
Q  32 ggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattttttcgaattttataatccgaagggcattttg 131  Q
    |||| ||||||||| |||||||||||||||   ||||| |||||||||||||||     |||  |||| ||||  ||||||||||| ||||||||||||     
T  1086263 ggagtggtgatttttcttatatatatcgaacctgttcgaattatataatccgaaccagtttttgtattatttctgattttataatctgaagggcattttt 1086362  T
Q  132 ggaaattctataggatgcgtgagtacctcatagggtggggaaaagtaatagtcta 186  Q
    | || || |  | |  || ||||||||||||||||| || |||||||||||||||    
T  1086363 gaaattttttcatggcgcatgagtacctcatagggt-ggaaaaagtaatagtcta 1086416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 16319478 - 16319543
Alignment:
Q  16 gtaaaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatc 81  Q
    |||||||||||||||||  ||||| ||||| |||||||||||||||   |||| ||||||||||||    
T  16319478 gtaaaactgtaaaatagatggggtaatttttcttatatatatcgaaacggttcagattatataatc 16319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 13120854 - 13120741
Alignment:
Q  19 aaactgtaaaataggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaattgcatttcatattttttcgaattttataatcc 118  Q
    |||||||||||| |||||| |||  || ||| ||||||||||||| || | ||||| |||| ||| | || ||||| ||||||| || |||   ||||||    
T  13120854 aaactgtaaaatgggagggatgaactttcttttatatatcgaagttgtccagattacataagccggaatgtatttcgtatttttccggattacgtaatcc 13120755  T
Q  119 gaagggcattttgg 132  Q
    ||||||||| ||||    
T  13120754 gaagggcatgttgg 13120741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 15598402 - 15598488
Alignment:
Q  339 taaataaaaaataggttaaatataatatagttgaaacttgattaagagattacataagtaat---aataacattaattaacgaacat 422  Q
    ||||| ||||| | ||||||||||||  | |||| |||| |||| || || |||||||||||   ||||||||||||||||||||||    
T  15598402 taaattaaaaacatgttaaatataatgcatttgagacttcattacgacatcacataagtaataataataacattaattaacgaacat 15598488  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 28243414 - 28243370
Alignment:
Q  19 aaactgtaaaataggaggggtgattttccttatatatatcgaagt 63  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||    
T  28243414 aaactgtaaaatgggaggggtgaacttccttttatatatcgaagt 28243370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 5300 - 5247
Alignment:
Q  32 ggaggggtgattttccttatatatatcgaagtagttcggattatataatccgaa 85  Q
    ||||||||||| || |||||||| ||||||   |||||||||||||||||||||    
T  5300 ggaggggtgatatttcttatatacatcgaaactgttcggattatataatccgaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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