View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12922_high_11 (Length: 277)
Name: NF12922_high_11
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12922_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 9121708 - 9121441
Alignment:
| Q |
1 |
tttatttgatacaaaatttaagaaccacacacatcattccataagaagaatacaaattgatagcataaaccacttctcatctacatcacactgaaaaatc |
100 |
Q |
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| T |
9121708 |
tttatttgatacaaaatttaagaaccacacacatcattccataagaagaatacaaattgattgcataaaccacttctcatctacatcacactaaaaaatc |
9121609 |
T |
|
| Q |
101 |
aaatagaagcaatgactgtttctaattacaacttgataggttcctaattattgcgaggacacaagactccaaacataataattcaccctcttt------- |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9121608 |
aaatagaagcaatgactgtttctaattacaacttgataggttcctaattcttgcgaggacacaagactccaaacataataattcaccctctttcctcacg |
9121509 |
T |
|
| Q |
194 |
gcatccagtctaagacaaggtggaaaatagaagatagtgtacaaacaaagaaatttggaagatattaa |
261 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9121508 |
gcatccagtctaagataaggtggaaaatagaagatagtgtacaaacaaagaaatttggaagatattaa |
9121441 |
T |
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