View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12922_high_13 (Length: 238)

Name: NF12922_high_13
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12922_high_13
NF12922_high_13
[»] chr2 (3 HSPs)
chr2 (1-200)||(37653484-37653676)
chr2 (138-207)||(36338481-36338550)
chr2 (138-196)||(2858936-2858994)
[»] chr6 (1 HSPs)
chr6 (138-176)||(25041622-25041660)
[»] chr3 (3 HSPs)
chr3 (155-186)||(43182053-43182084)
chr3 (145-200)||(54383589-54383644)
chr3 (138-200)||(45986131-45986193)
[»] chr4 (1 HSPs)
chr4 (146-186)||(26421813-26421853)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 37653484 - 37653676
Alignment:
Q  1 ccaataatttaacgaaatcattctaggagaaactgaggaactaaactaacttaaaccagatctttctcgtaatacatcgaatctaaatctctgtctcgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  37653484 ccaataatttaacgaaatcattctaggagaaactgaggaactaaactaacttaaaccagatttttctcataatacatcgaatctaaatctctgtctcgct 37653583  T
Q  101 acatgttggcaacaacatctgcatagtgcatactatttgccgaacttggtaacacaagcttgtgatctaagtagagacattaagatattgaaaggtcttt 200  Q
    |||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37653584 acatgttggcaacaacatc-------tgcatactatttgtcgaacttggtaacacaagcttgtgatctaagtagagacattaagatattggaaggtcttt 37653676  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 36338481 - 36338550
Alignment:
Q  138 tgccgaacttggtaacacaagcttgtgatctaagtagagacattaagatattgaaaggtctttcacatgt 207  Q
    |||||| ||||||||| |||||||||||  ||| ||  ||||||||||| ||||||||||||| ||||||    
T  36338481 tgccgagcttggtaacgcaagcttgtgacttaaatatggacattaagatgttgaaaggtctttgacatgt 36338550  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 2858994 - 2858936
Alignment:
Q  138 tgccgaacttggtaacacaagcttgtgatctaagtagagacattaagatattgaaaggt 196  Q
    |||||| ||||||||||||| |||||||||||||||| || ||| |||| ||| |||||    
T  2858994 tgccgagcttggtaacacaaacttgtgatctaagtagggatattgagatgttggaaggt 2858936  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 25041622 - 25041660
Alignment:
Q  138 tgccgaacttggtaacacaagcttgtgatctaagtagag 176  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25041622 tgccgaacttggtaacacaaacttgtgatctaagtagag 25041660  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 43182053 - 43182084
Alignment:
Q  155 caagcttgtgatctaagtagagacattaagat 186  Q
    ||||||||||||||||||||||||||||||||    
T  43182053 caagcttgtgatctaagtagagacattaagat 43182084  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 54383589 - 54383644
Alignment:
Q  145 cttggtaacacaagcttgtgatctaagtagagacattaagatattgaaaggtcttt 200  Q
    ||||||||| ||||||||||| |||||||| | ||||||||| ||| |||||||||    
T  54383589 cttggtaacgcaagcttgtgacctaagtaggggcattaagatgttggaaggtcttt 54383644  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 45986131 - 45986193
Alignment:
Q  138 tgccgaacttggtaacacaagcttgtgatctaagtagagacattaagatattgaaaggtcttt 200  Q
    ||||||||||||| |  |||||||||||||||| ||| ||||||||||| ||| || ||||||    
T  45986131 tgccgaacttggtgatgcaagcttgtgatctaaatagggacattaagatgttggaaagtcttt 45986193  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 26421813 - 26421853
Alignment:
Q  146 ttggtaacacaagcttgtgatctaagtagagacattaagat 186  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  26421813 ttggtaatgcaagcttatgatctaagtagagacattaagat 26421853  T

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