View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12922_low_12 (Length: 251)
Name: NF12922_low_12
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12922_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 36219157 - 36218920
Alignment:
| Q |
11 |
agaatggagttaaagggtcaccttcctttaggcctatttgaatattaatttcgtccgtatgatttccattaacaaggatagacatgttttcccaaataca |
110 |
Q |
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| T |
36219157 |
agaatggaattaaaggatcaccttcctttaggcctatttgaatattaatttcctccgtatgatttccattaacaaggatagacatgttttcccaaataca |
36219058 |
T |
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| Q |
111 |
caagccctcatgcaaattacccatttatttcaaaaacccacccgtctcatcatatatt----nnnnnnnnntcaaatcaaatcaaca----atgtacatt |
202 |
Q |
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| T |
36219057 |
caagccctcatccaaatcacccatttatttcaaaaacccacccgtctcatcatatactaaaaaaaataaaaaaaaatcaaatcaacaagttatacacatt |
36218958 |
T |
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| Q |
203 |
ttcaaaactgatctttgaaatcaaacattcacgcttca |
240 |
Q |
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| T |
36218957 |
ttcaaaactgatctttgaaatcaaacattcacgcttca |
36218920 |
T |
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