View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12922_low_14 (Length: 214)

Name: NF12922_low_14
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12922_low_14
NF12922_low_14
[»] chr6 (24 HSPs)
chr6 (1-214)||(4460952-4461165)
chr6 (1-143)||(4469348-4469494)
chr6 (95-214)||(3171664-3171783)
chr6 (117-214)||(4469752-4469845)
chr6 (150-214)||(4480671-4480735)
chr6 (153-214)||(4504487-4504548)
chr6 (164-214)||(4492947-4492997)
chr6 (150-214)||(4490445-4490509)
chr6 (164-214)||(4505849-4505899)
chr6 (169-214)||(4515211-4515256)
chr6 (153-214)||(4516302-4516363)
chr6 (170-214)||(4392116-4392160)
chr6 (170-214)||(4617020-4617064)
chr6 (6-56)||(4457451-4457502)
chr6 (167-214)||(4601784-4601831)
chr6 (99-214)||(4457561-4457677)
chr6 (172-214)||(4560506-4560548)
chr6 (172-214)||(4563711-4563753)
chr6 (184-214)||(4568065-4568095)
chr6 (165-214)||(4256702-4256751)
chr6 (172-213)||(4574308-4574349)
chr6 (164-209)||(4625943-4625988)
chr6 (166-214)||(4267256-4267304)
chr6 (158-214)||(4299830-4299886)
[»] chr8 (2 HSPs)
chr8 (167-214)||(1674221-1674268)
chr8 (172-214)||(20863933-20863975)
[»] chr5 (1 HSPs)
chr5 (167-214)||(28000189-28000236)
[»] scaffold0477 (1 HSPs)
scaffold0477 (175-214)||(4776-4815)
[»] chr3 (1 HSPs)
chr3 (167-214)||(1281109-1281156)
[»] chr7 (1 HSPs)
chr7 (178-214)||(3086426-3086462)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4460952 - 4461165
Alignment:
Q  1 aagttataaataaattaacagtgttattgtgaaaccttattgaatattgattgaaagagggcatagaaaaaatacaaggtttgtgattgcataaaattag 100  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  4460952 aagttataaataaattaataatgttattgtgaaaccttattgaatattgattgaaagagtgcatagaaaaaatacaaggtttgtgattgcttaaaattag 4461051  T
Q  101 aacttctaaactatgcattattttttcttatcaaataaatgatttctaaaagaaaagatcacattaatctaattttgtttaagcaagacatccttaatca 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4461052 aacttctaaactatgcattattttttcttatcaaagaaatgatttctaaaagaaaagatcacattaatctaattttgtttaagcaagacatccttaatga 4461151  T
Q  201 ctttgtccaagttc 214  Q
    ||||||||||||||    
T  4461152 ctttgtccaagttc 4461165  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 4469348 - 4469494
Alignment:
Q  1 aagttataaataaattaacagtgttattgtgaaaccttattgaatattgattgaaagagggcatagaaaa----aatacaaggtttgtgattgcataaaa 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    ||||||||||||||||||||||||||    
T  4469348 aagttataaatagattaacagtgttattgtgaaaccttattgaatattgatcgaaagagtgcatagaaaaaaaaaatacaaggtttgtgattgcataaaa 4469447  T
Q  97 ttagaacttctaaactatgcattattttttcttatcaaataaatgat 143  Q
     |||||||||||||||||||||||||||| ||||||||| |||||||    
T  4469448 ctagaacttctaaactatgcattatttttgcttatcaaagaaatgat 4469494  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 3171664 - 3171783
Alignment:
Q  95 aattagaacttctaaactatgcattattttttcttatcaaataaatgatttctaaaagaaaagatcacattaatctaattttgtttaagcaagacatcct 194  Q
    |||||||||||||||| |||||||||||| | |||   ||| |||| | | | | |||||||||||||||||||||||| ||||||||||||||| ||||    
T  3171664 aattagaacttctaaattatgcattatttgtgcttgcaaaagaaataaatccaataagaaaagatcacattaatctaatattgtttaagcaagacctcct 3171763  T
Q  195 taatcactttgtccaagttc 214  Q
    |||||||||| |||||||||    
T  3171764 taatcactttatccaagttc 3171783  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 4469752 - 4469845
Alignment:
Q  117 attattttttcttatcaaataaatgatttctaaaagaaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||| |||||||||||||||    
T  4469752 attatttttgcttatcaaagaaatgatttctaaaagaaaagatcactttaat---atttt-tttaagcaagacatccttaatgactttgtccaagttc 4469845  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 4480671 - 4480735
Alignment:
Q  150 aagaaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4480671 aagaaaaaatcacattaatctaattttgtttaagcaagacctccttaatcactttgtccaagttc 4480735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 4504548 - 4504487
Alignment:
Q  153 aaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  4504548 aaaagatcacattaatctaatattttttaagcaagacgtccttaatcactttgtccaagttc 4504487  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 4492947 - 4492997
Alignment:
Q  164 ttaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4492947 ttaatctaattttgtttaagcaagacatccttgatcactttgtccaagttc 4492997  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 4490509 - 4490445
Alignment:
Q  150 aagaaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||| || ||||||||  | |||||||| ||||||||||||||||||||||||||||    
T  4490509 aagaaaagatcatataaatctaatagtttttaagcatgacatccttaatcactttgtccaagttc 4490445  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 4505849 - 4505899
Alignment:
Q  164 ttaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  4505849 ttaatctaattttgtttaagcaacacctccttaataactttgtccaagttc 4505899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 4515256 - 4515211
Alignment:
Q  169 ctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||    
T  4515256 ctaattttgtttaagcaacacctccttgatcactttgtccaagttc 4515211  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 4516302 - 4516363
Alignment:
Q  153 aaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||| ||||| ||||||||||||||||| ||||  || |||||||||||||| |||||||||    
T  4516302 aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttc 4516363  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 4392160 - 4392116
Alignment:
Q  170 taattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||    
T  4392160 taattatgtttaagcaagacctccttaatcagtttgtccaagttc 4392116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 4617020 - 4617064
Alignment:
Q  170 taattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||||    
T  4617020 taattttgtttaagcaacacatccttaataactttgttcaagttc 4617064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 4457451 - 4457502
Alignment:
Q  6 ataaataaattaacagtgttattgtgaaa-ccttattgaatattgattgaaa 56  Q
    |||||||||||||||||||| |||| ||| |||| |||||||||||||||||    
T  4457451 ataaataaattaacagtgttgttgttaaaccctttttgaatattgattgaaa 4457502  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 4601784 - 4601831
Alignment:
Q  167 atctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||||||||||| || |||||||| |||||||||| ||||    
T  4601784 atctaattttgtttaagcaacacctccttaataactttgtccaggttc 4601831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 4457561 - 4457677
Alignment:
Q  99 agaacttctaaactatgcattattttttcttatcaaataaatgatttctaaaagaaaagatcacattaat--ctaattttgtttaagcaagacatcctta 196  Q
    ||||||||||||||||||||||||||  |||||  || |||| | ||| | | ||||||||||| |||||  ||||| ||  | ||||| ||| ||||||    
T  4457561 agaacttctaaactatgcattattttg-cttatataagaaattaattccatatgaaaagatcactttaatatctaatatttgtgaagcatgacttcctta 4457659  T
Q  197 atcactttgtccaagttc 214  Q
     |||||||||||||||||    
T  4457660 gtcactttgtccaagttc 4457677  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 4560506 - 4560548
Alignment:
Q  172 attttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||||||||| || |||||||||||||| |||||||||    
T  4560506 attttgtttaagcaacacctccttaatcactttctccaagttc 4560548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 4563711 - 4563753
Alignment:
Q  172 attttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||||||||| || ||||| ||||||||||||||||||    
T  4563711 attttgtttaagcaaaacctccttgatcactttgtccaagttc 4563753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 4568065 - 4568095
Alignment:
Q  184 caagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||||||||||||||||||||||    
T  4568065 caagacatccttaatcactttgtccaagttc 4568095  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 4256751 - 4256702
Alignment:
Q  165 taatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||| | ||||||||||| ||| |||||||| |||||||||||||||    
T  4256751 taatctagtattgtttaagcatgacctccttaataactttgtccaagttc 4256702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 4574308 - 4574349
Alignment:
Q  172 attttgtttaagcaagacatccttaatcactttgtccaagtt 213  Q
    ||||||||||||||| || |||||||||||||| ||||||||    
T  4574308 attttgtttaagcaacacctccttaatcactttctccaagtt 4574349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 4625943 - 4625988
Alignment:
Q  164 ttaatctaattttgtttaagcaagacatccttaatcactttgtcca 209  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  4625943 ttaatctaatattgtttaagcaagacatcattaatcagtttatcca 4625988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 4267304 - 4267256
Alignment:
Q  166 aatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||| | ||||||||||| ||| |||||||| |||||||||||||||    
T  4267304 aatctagtattgtttaagcatgacctccttaataactttgtccaagttc 4267256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 4299886 - 4299830
Alignment:
Q  158 atcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||| ||| |||||| |||||||||||  || |||||||| |||||||||||||||    
T  4299886 atcactttattctaatattgtttaagcagaacctccttaataactttgtccaagttc 4299830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 1674221 - 1674268
Alignment:
Q  167 atctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  1674221 atctaattttgtttaagcaacacttccttaatcactttgtccaagttc 1674268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 20863975 - 20863933
Alignment:
Q  172 attttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  20863975 attttgtttaagcaacacctccttaatcactttgtccaagttc 20863933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 28000236 - 28000189
Alignment:
Q  167 atctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||||    
T  28000236 atctaattttgtttaaacaacacttccttaatcactttgtccaagttc 28000189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 4815 - 4776
Alignment:
Q  175 ttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttc 4776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 1281109 - 1281156
Alignment:
Q  167 atctaattttgtttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||||||||||| |  ||||||||||||||||| ||||||    
T  1281109 atctaattttgtttaagcaacatttccttaatcactttgtcgaagttc 1281156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 3086426 - 3086462
Alignment:
Q  178 tttaagcaagacatccttaatcactttgtccaagttc 214  Q
    |||||||||||| |||||||| |||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttc 3086462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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