View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12922_low_2 (Length: 514)

Name: NF12922_low_2
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12922_low_2
NF12922_low_2
[»] chr5 (24 HSPs)
chr5 (295-488)||(13312519-13312714)
chr5 (95-225)||(13312318-13312448)
chr5 (295-488)||(22169377-22169573)
chr5 (4-100)||(13312157-13312253)
chr5 (335-488)||(38521961-38522115)
chr5 (355-488)||(42034739-42034872)
chr5 (365-488)||(35922724-35922848)
chr5 (325-488)||(19621466-19621630)
chr5 (320-488)||(43461694-43461863)
chr5 (324-473)||(33958988-33959138)
chr5 (295-459)||(43262708-43262889)
chr5 (295-462)||(7156000-7156182)
chr5 (398-462)||(30704398-30704462)
chr5 (324-470)||(31189526-31189675)
chr5 (325-420)||(36169394-36169491)
chr5 (409-488)||(30045885-30045964)
chr5 (420-488)||(2477302-2477370)
chr5 (325-389)||(15221662-15221727)
chr5 (325-369)||(33958926-33958970)
chr5 (325-383)||(36169352-36169410)
chr5 (414-486)||(622500-622570)
chr5 (325-389)||(13312696-13312761)
chr5 (426-482)||(15221618-15221674)
chr5 (325-369)||(35922659-35922703)
[»] chr2 (12 HSPs)
chr2 (295-488)||(30906044-30906240)
chr2 (355-488)||(1400767-1400901)
chr2 (281-486)||(43900433-43900642)
chr2 (325-463)||(45305918-45306057)
chr2 (365-488)||(28527316-28527439)
chr2 (386-488)||(33667328-33667431)
chr2 (325-488)||(7378463-7378625)
chr2 (295-389)||(1400689-1400785)
chr2 (325-383)||(41212411-41212469)
chr2 (325-389)||(28527269-28527334)
chr2 (408-462)||(34175155-34175209)
chr2 (325-389)||(33667413-33667478)
[»] chr4 (25 HSPs)
chr4 (324-488)||(16583546-16583712)
chr4 (325-488)||(9809025-9809190)
chr4 (310-467)||(55666840-55666997)
chr4 (337-488)||(1966826-1966979)
chr4 (324-488)||(42908519-42908684)
chr4 (325-473)||(17633349-17633499)
chr4 (300-474)||(35544427-35544603)
chr4 (329-471)||(8740801-8740945)
chr4 (325-488)||(9810711-9810878)
chr4 (281-485)||(19596685-19596895)
chr4 (366-482)||(33249615-33249732)
chr4 (380-488)||(14351069-14351178)
chr4 (324-463)||(33179777-33179918)
chr4 (325-472)||(2433667-2433811)
chr4 (323-386)||(1966778-1966841)
chr4 (398-462)||(24669210-24669274)
chr4 (295-359)||(25007626-25007690)
chr4 (295-369)||(19596902-19596977)
chr4 (325-390)||(24669270-24669336)
chr4 (325-389)||(42908666-42908730)
chr4 (365-401)||(1966979-1967015)
chr4 (325-369)||(17633288-17633332)
chr4 (295-369)||(9810882-9810957)
chr4 (365-419)||(20874825-20874880)
chr4 (333-389)||(14351160-14351217)
[»] chr3 (39 HSPs)
chr3 (295-488)||(3823571-3823768)
chr3 (324-481)||(42637956-42638115)
chr3 (295-488)||(3785882-3786078)
chr3 (325-481)||(1705670-1705826)
chr3 (329-488)||(26308633-26308794)
chr3 (324-488)||(4169098-4169255)
chr3 (328-482)||(19280152-19280307)
chr3 (325-488)||(19624257-19624421)
chr3 (327-480)||(44080209-44080364)
chr3 (365-488)||(31545608-31545732)
chr3 (308-474)||(27079303-27079470)
chr3 (308-474)||(27085100-27085267)
chr3 (365-488)||(22432322-22432446)
chr3 (377-481)||(42481304-42481409)
chr3 (325-463)||(9710742-9710876)
chr3 (331-488)||(5341833-5341992)
chr3 (386-462)||(27335402-27335479)
chr3 (281-431)||(11509808-11509962)
chr3 (385-472)||(13358101-13358189)
chr3 (298-447)||(23163252-23163404)
chr3 (398-488)||(34627292-34627382)
chr3 (325-487)||(27707625-27707788)
chr3 (411-488)||(11501309-11501386)
chr3 (386-462)||(27365008-27365085)
chr3 (398-463)||(39126190-39126254)
chr3 (310-386)||(27040683-27040760)
chr3 (325-389)||(31545714-31545779)
chr3 (325-389)||(3786060-3786124)
chr3 (325-389)||(3823750-3823814)
chr3 (398-462)||(27326047-27326111)
chr3 (398-462)||(27332284-27332348)
chr3 (295-389)||(33488214-33488313)
chr3 (336-375)||(11501270-11501309)
chr3 (424-462)||(18733538-18733576)
chr3 (403-453)||(23163787-23163837)
chr3 (328-401)||(41571797-41571871)
chr3 (325-369)||(5341995-5342039)
chr3 (295-389)||(39126263-39126359)
chr3 (423-471)||(55165096-55165144)
[»] chr7 (25 HSPs)
chr7 (324-472)||(20556716-20556866)
chr7 (324-488)||(18312777-18312942)
chr7 (325-488)||(31303404-31303569)
chr7 (322-488)||(21548401-21548568)
chr7 (325-488)||(21589574-21589739)
chr7 (343-488)||(4290796-4290942)
chr7 (324-486)||(22740654-22740818)
chr7 (310-488)||(5083785-5083964)
chr7 (377-488)||(28804983-28805094)
chr7 (325-488)||(15958306-15958472)
chr7 (386-462)||(46943761-46943839)
chr7 (295-369)||(28804902-28804977)
chr7 (327-462)||(32964706-32964852)
chr7 (325-389)||(5083739-5083803)
chr7 (295-389)||(22033158-22033253)
chr7 (325-387)||(31303553-31303615)
chr7 (416-484)||(5174910-5174978)
chr7 (295-369)||(22032981-22033055)
chr7 (325-389)||(15958259-15958324)
chr7 (325-389)||(21548550-21548615)
chr7 (325-389)||(21589721-21589786)
chr7 (379-420)||(2887188-2887230)
chr7 (325-390)||(32964848-32964914)
chr7 (325-389)||(28805116-28805181)
chr7 (416-472)||(27523496-27523552)
[»] chr6 (26 HSPs)
chr6 (281-488)||(3222337-3222548)
chr6 (325-488)||(33815008-33815174)
chr6 (324-486)||(10304695-10304859)
chr6 (325-488)||(22608312-22608476)
chr6 (310-486)||(3620755-3620932)
chr6 (377-488)||(138708-138820)
chr6 (377-488)||(146729-146841)
chr6 (308-488)||(2834884-2835078)
chr6 (378-488)||(9068411-9068521)
chr6 (295-482)||(23595074-23595254)
chr6 (424-488)||(2430600-2430664)
chr6 (325-369)||(30056072-30056116)
chr6 (398-461)||(9474656-9474718)
chr6 (318-389)||(2430650-2430721)
chr6 (424-488)||(7706862-7706926)
chr6 (325-385)||(10304647-10304707)
chr6 (325-372)||(11108116-11108163)
chr6 (295-389)||(9068503-9068599)
chr6 (324-375)||(9068343-9068394)
chr6 (295-389)||(7706779-7706876)
chr6 (333-389)||(138669-138726)
chr6 (333-389)||(146690-146747)
chr6 (325-389)||(2430554-2430618)
chr6 (325-384)||(7915696-7915756)
chr6 (325-369)||(23595260-23595304)
chr6 (325-365)||(24386334-24386374)
[»] scaffold1126 (2 HSPs)
scaffold1126 (329-488)||(202-363)
scaffold1126 (325-386)||(155-217)
[»] chr8 (20 HSPs)
chr8 (325-488)||(5321955-5322120)
chr8 (325-485)||(38606824-38606986)
chr8 (295-460)||(29367076-29367243)
chr8 (299-486)||(5573704-5573893)
chr8 (365-488)||(1240894-1241017)
chr8 (295-488)||(1251470-1251665)
chr8 (331-488)||(15714688-15714847)
chr8 (310-488)||(26493330-26493507)
chr8 (295-488)||(31596715-31596911)
chr8 (295-488)||(31273555-31273751)
chr8 (325-462)||(15233169-15233318)
chr8 (335-418)||(33286178-33286263)
chr8 (424-488)||(26914684-26914748)
chr8 (398-462)||(28700176-28700240)
chr8 (426-481)||(24575907-24575962)
chr8 (398-474)||(6809821-6809898)
chr8 (385-482)||(24537981-24538078)
chr8 (310-443)||(32959496-32959631)
chr8 (325-389)||(15714641-15714706)
chr8 (296-359)||(24576184-24576248)
[»] chr1 (26 HSPs)
chr1 (365-488)||(29677078-29677202)
chr1 (324-488)||(34364183-34364347)
chr1 (324-488)||(38951854-38952023)
chr1 (325-488)||(34490140-34490304)
chr1 (333-463)||(25238436-25238567)
chr1 (365-488)||(29167803-29167926)
chr1 (365-488)||(42604210-42604334)
chr1 (281-488)||(5831438-5831648)
chr1 (424-488)||(2569960-2570024)
chr1 (386-461)||(2996025-2996101)
chr1 (329-462)||(9468064-9468199)
chr1 (325-461)||(517433-517570)
chr1 (309-425)||(9929834-9929951)
chr1 (325-389)||(5855057-5855122)
chr1 (325-389)||(29677032-29677096)
chr1 (295-369)||(13350903-13350978)
chr1 (326-387)||(38244801-38244863)
chr1 (431-488)||(9929724-9929781)
chr1 (325-386)||(29167757-29167818)
chr1 (325-386)||(5831633-5831695)
chr1 (325-390)||(5855201-5855267)
chr1 (325-386)||(34490289-34490351)
chr1 (288-352)||(28499662-28499727)
chr1 (310-389)||(2569892-2569974)
chr1 (325-369)||(25238595-25238639)
chr1 (325-353)||(29168551-29168579)
[»] scaffold0251 (1 HSPs)
scaffold0251 (324-479)||(10617-10774)
[»] scaffold0123 (1 HSPs)
scaffold0123 (325-482)||(24020-24180)
[»] scaffold0126 (3 HSPs)
scaffold0126 (295-412)||(21549-21667)
scaffold0126 (454-488)||(21511-21545)
scaffold0126 (295-389)||(21433-21529)
[»] scaffold0043 (1 HSPs)
scaffold0043 (386-462)||(87035-87112)
[»] scaffold0024 (1 HSPs)
scaffold0024 (386-462)||(112158-112235)
[»] scaffold0291 (1 HSPs)
scaffold0291 (386-462)||(5870-5947)
[»] scaffold0213 (2 HSPs)
scaffold0213 (326-388)||(24932-24995)
scaffold0213 (325-368)||(24754-24797)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 295 - 488
Target Start/End: Original strand, 13312519 - 13312714
Alignment:
Q  295 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaa 393  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13312519 ttaatgtgtacacccttttgtactattttcgaaaatttcaattaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccgctatttagaa 13312618  T
Q  394 gctg-aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13312619 gctgaaaaatgtggtcacgcaactaaaatgcgcgtggcaactatttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaact 13312714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 13312318 - 13312448
Alignment:
Q  95 atgcagtgatcaaattagcaatagctcgtgtgcactatttgtaattgcgtttgtgaaccatccttcttttagagtctttataatgatgatcttcattttg 194  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13312318 atgcagtgatcaaattagtaatagcttgtgtgcactatttgtaattgcgtttgtgaaccatccttcttttagagtctttataatgatgatcttctttttg 13312417  T
Q  195 ttgctaacaaattttagcgtgtggatctggg 225  Q
    ||||||||||||||||| |||||||||||||    
T  13312418 ttgctaacaaattttagtgtgtggatctggg 13312448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 295 - 488
Target Start/End: Original strand, 22169377 - 22169573
Alignment:
Q  295 ttaatgtgtacacctt-ttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 392  Q
    |||||||||||||| | |||||  |||||||||||||||||||||| ||||||||||  ||||||| ||||||||| |||||| |||||||||||||| |    
T  22169377 ttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatggaatatgtgatcacattttttcagttgcgtgaccactatttata 22169476  T
Q  393 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    || |||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| || |||||||||||||||||||||    
T  22169477 agttgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttcaacgtagttaaccaaataaattttgaaaaaataatggtcacgcaact 22169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 13312157 - 13312253
Alignment:
Q  4 tagatgccacagacaagacagattatcaactgtcattgtcattttcccaactgggatatataactgatggttctgtgaatatggtgacaacatgcag 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13312157 tagatgccacagacgagacacattatcaactgtcattgtcattttcccaactgggatatataactgatggttctgtgaatatggtgacaacatgcag 13312253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 335 - 488
Target Start/End: Complemental strand, 38522115 - 38521961
Alignment:
Q  335 ttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgacca 432  Q
    ||||||||||||||||||||||||| ||||||||| || |||  |||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  38522115 ttaaccaaatatatggtctatgtgaccacattttttcaattgcatgaccactatttagaagctgaaaaatgtggtcacgcga-taaaatgcgcgtgacca 38522017  T
Q  433 ttatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
     ||||||| |||||||||||| ||||||||| | ||||| ||||||||||||||||    
T  38522016 ctatttttacacttagttaactaaataaattctagaaaactaatggtcacgcaact 38521961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 355 - 488
Target Start/End: Original strand, 42034739 - 42034872
Alignment:
Q  355 tgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaac 453  Q
    ||||| ||||||||||||||| |||||  ||||| |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42034739 tgtgaccacatttttcagttgcgtgactcctatt-agaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccacttagttaac 42034837  T
Q  454 caaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||| ||||||| || |||||||||||||    
T  42034838 caaataaattttggaaaactagtggtcacgcaact 42034872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 365 - 488
Target Start/End: Original strand, 35922724 - 35922848
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||||||| |||||||||||||||||||    
T  35922724 tttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgtatgaccactatttttccatttagttaaccaaataaatt 35922823  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
     || ||||||| |||||| ||||||    
T  35922824 ctgaaaaaatagtggtcatgcaact 35922848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 325 - 488
Target Start/End: Complemental strand, 19621630 - 19621466
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactattt----agaagctgaaaatgtggtcacgcaactaaa 419  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||| | ||| |||||||||||||    ||||    |||| |||||||||||||||||    
T  19621630 aaaatttcagttaaccaaatatatggtatgtgtgaccacatttttccatttgcgtgaccactatttttccagaa----aaaacgtggtcacgcaactaaa 19621535  T
Q  420 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| || | ||||||||    
T  19621534 atgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaaaatagtgattacgcaact 19621466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 320 - 488
Target Start/End: Complemental strand, 43461863 - 43461694
Alignment:
Q  320 ttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaacta 417  Q
    ||||||||||||||||||| |||||||||||||| || || || | ||||||||||| |||||||||||||||||| || |||||  |||||||||||||    
T  43461863 ttttgaaaatttcagttaatcaaatatatggtctttg-gaccatattttttcagttgtgtgaccactatttagaagttgaaaaatacggtcacgcaacta 43461765  T
Q  418 aaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||| | ||| |||| |||||||||||||||| ||||||||||||| || ||||||| | ||||| |||||    
T  43461764 aaattcacgtaaccactatttttccacttagtaaaccaaataaattctgaaaaaatagttgtcacacaact 43461694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 324 - 473
Target Start/End: Complemental strand, 33959138 - 33958988
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 421  Q
    ||||| |||||||||| ||||||||  |||||||||  |||||||| ||| || ||||||||||||||||| ||||||| | ||||||||||||||||||    
T  33959138 gaaaacttcagttaacaaaatatata-tctatgtgattacattttttcagctgcgtgaccactatttagaaactgaaaaatatggtcacgcaactaaaat 33959040  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaat 473  Q
     || || |||| ||||||||||||||||| |||||||||||| |||||||||    
T  33959039 ccgagtaaccactatttttccacttagttgaccaaataaattctggaaaaat 33958988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 43262889 - 43262708
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactattt--- 389  Q
    ||||||||||||||  ||||||||| |||  ||||||||||||||||||||||||||||| ||||| ||||||| || ||||  ||||| |||||||       
T  43262889 ttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacatttgtttagttatgtgactactatttttc 43262790  T
Q  390 --------agaagctgaa----aatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaata 459  Q
            | ||||||||    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43262789 caacatttaaaagctgaagaaaaatgtggtcacacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaata 43262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 295 - 462
Target Start/End: Original strand, 7156000 - 7156182
Alignment:
Q  295 ttaatgtgtacacctttt-gtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactattt--- 389  Q
    |||||||||||| ||||| |||| | ||| ||||||||||||||| |||||||||||| ||| ||| ||||||||| |||||   ||||||||||||       
T  7156000 ttaatgtgtacatctttttgtaccactttagaaaatttcagttaatcaaatatatggtttatatgatcacattttttcagttatatgaccactatttttt 7156099  T
Q  390 ---------agaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
             |||||||||||| |||| || ||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  7156100 tcagaatttagaagctgaaaaatgtgatcgcgcaactaaaatatgcgtgaccattatttttccacttaattaaccaaataaat 7156182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 30704462 - 30704398
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30704462 aaaatgtggtcgcacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataaat 30704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 324 - 470
Target Start/End: Original strand, 31189526 - 31189675
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt---cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaa 419  Q
    ||||||||||||||||||||||||| || | ||||| |||||||||   || |||  |||  ||||||||||||||||||| |||| |||||||||||||    
T  31189526 gaaaatttcagttaaccaaatatatagtatgtgtgaccacatttttgtccaattgcatgattactatttagaagctgaaaaatgtgatcacgcaactaaa 31189625  T
Q  420 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaa 470  Q
    |||   ||||||| || |||||||||| ||||| |||||||||| ||||||    
T  31189626 atgtttgtgaccacta-ttttccacttggttaatcaaataaattctggaaa 31189675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 36169491 - 36169394
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatt-tttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaa 420  Q
    |||||||||| | | |||||||||||| | ||||| |||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  36169491 aaaatttcagctgatcaaatatatggtatgtgtgaccacattctttcagttgcgtgaccactatttagaagctgaaaaatatggtcacgcaactaaaa 36169394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 30045885 - 30045964
Alignment:
Q  409 acgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||  |  |||||||||||||| |||||    
T  30045885 acgcaactaaaatacgcgtgaccactatttttccatttaattaaccaaataaattcggtgaaaataatggtcacacaact 30045964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 2477302 - 2477370
Alignment:
Q  420 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||| || ||||||| ||| |||||||||    
T  2477302 atgcgcgtggccactatttttcgacttagttaaccaaataaattctgtaaaaatagtggccacgcaact 2477370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 15221727 - 15221662
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    ||||||||||||||| ||||||||||||| ||||| |||| ||||| | ||| |||||||||||||    
T  15221727 aaaatttcagttaactaaatatatggtctgtgtgaccacatttttttaattgtgtgaccactattt 15221662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 33958926 - 33958970
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||    
T  33958926 aaaatttcacttaaccaaatatatggtctatgtaatcacattttt 33958970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 36169352 - 36169410
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgacca 383  Q
    ||||||| |||||||||||||||||||   ||||| ||||||||| ||||| |||||||    
T  36169352 aaaattttagttaaccaaatatatggtaggtgtgaccacattttttagttgcgtgacca 36169410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 486
Target Start/End: Original strand, 622500 - 622570
Alignment:
Q  414 actaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaa 486  Q
    ||||||||| |||||| || |||||||  ||||| |||| |||||||||| |||||||||||  |||||||||    
T  622500 actaaaatgtgcgtgatcactattttt--acttacttaatcaaataaattctggaaaaataagtgtcacgcaa 622570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 13312761 - 13312696
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    ||||||||||||||||| ||||||| | | ||||| |||| ||||| ||||| |||||||||||||    
T  13312761 aaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactattt 13312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 15221618 - 15221674
Alignment:
Q  426 gtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 482  Q
    ||||||| | |||||||||||| ||||| ||||||||| || ||||||| |||||||    
T  15221618 gtgaccactctttttccacttaattaactaaataaattctgaaaaaatagtggtcac 15221674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 35922659 - 35922703
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    |||||||||||||| |||||||||||| | ||||| |||||||||    
T  35922659 aaaatttcagttaatcaaatatatggtatgtgtgaccacattttt 35922703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 295 - 488
Target Start/End: Complemental strand, 30906240 - 30906044
Alignment:
Q  295 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacac-atttttcagttgggtgaccactatttaga 392  Q
    |||||||||||||| |||||||| | | |  |||||||||||||||||||||||||||||  |||| ||| |||||||||||  |||||||||||||| |    
T  30906240 ttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgaccaccatttttcagtttcgtgaccactatttaaa 30906141  T
Q  393 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
     |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||    
T  30906140 tgctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaagcaaataaattatggaaacatagtggtcacacaact 30906044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 355 - 488
Target Start/End: Complemental strand, 1400901 - 1400767
Alignment:
Q  355 tgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaac 453  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| || ||||||||||||||||||||    
T  1400901 tgtgaccacatttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacacaacaaaaatgcgcgtgatcactatttttccacttagttaac 1400802  T
Q  454 caaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||||||||||||||| |||||||||||||    
T  1400801 caaataaattatggaaaaatagtggtcacgcaact 1400767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 281 - 486
Target Start/End: Original strand, 43900433 - 43900642
Alignment:
Q  281 gattgatagacacgtt-aatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttggg 377  Q
    ||||||||||||| || |||||||| | | |||||||| | | | ||||||||||| |||| ||||||||||||| ||||| ||||||||| |||||| |    
T  43900433 gattgatagacacttttaatgtgtagatcattttgtaccactctcgaaaatttcaggtaactaaatatatggtctgtgtgatcacattttttcagttgtg 43900532  T
Q  378 tgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataat 476  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||| || |||||||      
T  43900533 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttctatttagttaaccaaataaattctgaaaaaatagg 43900632  T
Q  477 ggtcacgcaa 486  Q
    ||||||||||    
T  43900633 ggtcacgcaa 43900642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 325 - 463
Target Start/End: Original strand, 45305918 - 45306057
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    |||||||||||||| ||||||||| |||| | ||| || |||||| |||||| |||||||| ||||| |||||||||| ||||| |||||||||||||||    
T  45305918 aaaatttcagttaatcaaatatatagtctgtatgaccatattttttcagttgcgtgaccac-atttaaaagctgaaaaatgtggccacgcaactaaaatg 45306016  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
     ||||||||| ||||||||||||||||||||| ||||||||    
T  45306017 tgcgtgaccactatttttccacttagttaaccgaataaatt 45306057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 365 - 488
Target Start/End: Complemental strand, 28527439 - 28527316
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||||| ||||| |||||||  |||||||||||| ||||||| |||||| |||||| ||||| ||||||| |||||||||| |||||||||||||||||||    
T  28527439 ttttttagttgcgtgaccataatttagaagctggaaaatgttgtcacg-aactaacatgcgtgtgaccactatttttccaattagttaaccaaataaatt 28527341  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
     |||||||||| |||||||||||||    
T  28527340 ctggaaaaatagtggtcacgcaact 28527316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 33667328 - 33667431
Alignment:
Q  386 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgc 484  Q
    ||||||||| |||||| ||||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||| ||| || ||||||| |||||||||    
T  33667328 atttagaagttgaaaaatgtggtcacgcaattaaaatgtgcgtaaccactatttttccacttagttaaccaaatatattctgaaaaaatagtggtcacgc 33667427  T
Q  485 aact 488  Q
    ||||    
T  33667428 aact 33667431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 488
Target Start/End: Complemental strand, 7378625 - 7378463
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaatgtggtcacgcaactaaaatgc 423  Q
    ||||||||||||||| ||||||||||| | ||||| || |||||| |||||| || ||||| ||||||||||| ||||| |||| ||||||||||||||     
T  7378625 aaaatttcagttaacaaaatatatggtttgtgtgaccatattttttcagttgcgtaaccac-atttagaagctaaaaatatggtgacgcaactaaaatgt 7378527  T
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    | ||||||| |||| ||||||||| |||||| | |||||| |  ||||||| | |||||||||||    
T  7378526 gtgtgaccactattattccacttaattaacc-attaaattttaaaaaaatagtagtcacgcaact 7378463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 1400689 - 1400785
Alignment:
Q  295 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    |||||||||||||| |||||||| | | |  ||||||||||||||||||||||||||| | ||||| |||| ||||| ||||| |||||||||||||    
T  1400689 ttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactattt 1400785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 41212469 - 41212411
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgacca 383  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||| ||||| |||||||    
T  41212469 aaaatttaagttaaccaaatatatggtctgtgtgaccacattttttagttgtgtgacca 41212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 28527269 - 28527334
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    |||||||||| |||||||||||||||||| ||||| |||| ||||| ||||| |||||||||||||    
T  28527269 aaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactattt 28527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 34175155 - 34175209
Alignment:
Q  408 cacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    ||||||||||||||| | |||||   |||||||||||||||||||||||||||||    
T  34175155 cacgcaactaaaatgtgtgtgactgctatttttccacttagttaaccaaataaat 34175209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 33667478 - 33667413
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactattt 389  Q
    ||||||| ||||||||||||||||||| | | ||||||||| |||| ||||| |||||||||||||    
T  33667478 aaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccactattt 33667413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 324 - 488
Target Start/End: Original strand, 16583546 - 16583712
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 421  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||| |||||| ||||||||||||||||||||||||| | || ||| |||||||||||    
T  16583546 gaaaatttcagttaaccaaatatatggttgatgtgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatatgatcatgcaactaaaat 16583645  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| |||||| | |||||||||||    
T  16583646 gcgcgtgaccactatttttccacttaattaaccaaataaattatggtaaaatagtagtcacgcaact 16583712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 9809025 - 9809190
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    |||| |||||||||| |||||||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||    
T  9809025 aaaaattcagttaactaaatatatggtctgcgtgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtagtcacgcaactcaaatg 9809124  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  9809125 cgcgtgaccactatttttccatttagttaaccaaataatttatggaaaaaaaatggtcacgcaact 9809190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 310 - 467
Target Start/End: Complemental strand, 55666997 - 55666840
Alignment:
Q  310 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtc 408  Q
    ||||||| | ||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| |||||| |||||| |||| ||||||    
T  55666997 tttgtaccactttcgaaaatttcagttaactaaatatatggtctgtgtgaccacatttttcagttgcgtgaccattatttataagctgaaaaacgtggtc 55666898  T
Q  409 acgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatgg 467  Q
    ||| ||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||    
T  55666897 acg-aactaaaatgttcgtgaccactatttttccacttagttaagcaaataaattatgg 55666840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 337 - 488
Target Start/End: Complemental strand, 1966979 - 1966826
Alignment:
Q  337 aaccaaatatatggtctatgtgaacacatttttc--agttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccat 433  Q
    |||||||||||||   ||||||| |||||||||   ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||     
T  1966979 aaccaaatatatgacatatgtgaccacattttttttagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaa-tgcgcgtgaccac 1966881  T
Q  434 tatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||||||| ||||||||||||||| ||||||| || |||||||||||||    
T  1966880 tatttttccacttaattaaccaaataaattctggaaaactagtggtcacgcaact 1966826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 324 - 488
Target Start/End: Original strand, 42908519 - 42908684
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa--tgtggtcacgcaactaaaat 421  Q
    |||||||| ||| ||||||||||||||||| | ||| || |||||||||||| |||||||| ||||| ||| ||||||  |||| |||||||||||||||    
T  42908519 gaaaattttagtgaaccaaatatatggtctgtttgaccatatttttcagttgtgtgaccac-atttaaaagttgaaaaaatgtgatcacgcaactaaaat 42908617  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| |||||||||| |||| || |||||    
T  42908618 gcgcgtgaccactatgtttcctcttagttaaccaaataaattctggaaaaatagtggtgactcaact 42908684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 325 - 473
Target Start/End: Complemental strand, 17633499 - 17633349
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagct--gaaaatgtggtcacgcaactaaaat 421  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||| || |||||| |   ||||| ||||||||||||||||||    
T  17633499 aaaatttcagttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccac-atctagaagtttgaaaaatatggtcacgcaactaaaat 17633401  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaat 473  Q
    ||||||||||| |||||||  ||||||||||||||||||||| |||| ||||    
T  17633400 gcgcgtgaccactattttttaacttagttaaccaaataaattttggacaaat 17633349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 474
Target Start/End: Complemental strand, 35544603 - 35544427
Alignment:
Q  300 gtgtacacctt-ttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctg 397  Q
    ||||||||||| || || || |||| |||||||||||||| |||||||||||| | ||||| |||| |||||| ||||  ||||||||||||||||||||    
T  35544603 gtgtacaccttattatattacttttaaaaatttcagttaatcaaatatatggtatgtgtgatcacattttttccgttgtatgaccactatttagaagctg 35544504  T
Q  398 -aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 474  Q
     ||||||||||||||||||| ||||||| |||| || |||||||||||||| ||||| ||||||||| |||| |||||    
T  35544503 aaaaatgtggtcacgcaact-aaatgcgtgtgatcactatttttccacttaattaactaaataaattttggataaata 35544427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 329 - 471
Target Start/End: Complemental strand, 8740945 - 8740801
Alignment:
Q  329 tttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgc 425  Q
    |||||||||| ||||| |||| ||| ||||| || ||||||  |||||| |||| |||||||||||||||||||| |||||||||| | |||||||||||    
T  8740945 tttcagttaatcaaatgtatgatctgtgtgaccatatttttttcagttgcgtgatcactatttagaagctgaaaaatgtggtcacgta-ctaaaatgcgc 8740847  T
Q  426 gtgaccattatttttccacttagttaaccaaataaattatggaaaa 471  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||    
T  8740846 gtgaccactatttttctacttagttaactaaataaattatggaaaa 8740801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 9810711 - 9810878
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    ||||||||||||||  ||||||||||| |  || | ||||||||| |||||| |||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  9810711 aaaatttcagttaattaaatatatggtttgcgttaccacattttttcagttgcgtgaccactatttagaagctaaaaaatgtagtcacgcaactcaaatg 9810810  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa--tggtcacgcaact 488  Q
     ||||||||  |||||||||| |||||||||||||||| ||||| ||||| ||  |||||||||||||    
T  9810811 tgcgtgacctctatttttccatttagttaaccaaataatttatgaaaaaaaaaattggtcacgcaact 9810878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 485
Target Start/End: Original strand, 19596685 - 19596895
Alignment:
Q  281 gattgatagaca-cgttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt---cagttg 375  Q
    |||||||||||| | ||||||||||||||  ||||||| | | |  ||||| || ||| |||||||||||||||   |||| |||||||||   ||| ||    
T  19596685 gattgatagacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtcagcgtgaccacattttttttcagctg 19596784  T
Q  376 ggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 474  Q
     || |||| ||||||||||||||||| |||||||||||||||||||||||| |||| | |||||  ||||||||||||||||||||||| || ||| |||    
T  19596785 tgtaaccattatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgactactatttacccacttagttaaccaaataaattctgaaaacata 19596884  T
Q  475 atggtcacgca 485  Q
     ||||||||||    
T  19596885 gtggtcacgca 19596895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 482
Target Start/End: Complemental strand, 33249732 - 33249615
Alignment:
Q  366 ttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatta 464  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||||||  ||||||||| ||||||| ||||||||||| ||||||| ||||||||||     
T  33249732 ttttcagttgcgtgaccactatttagaaggtgaaaaatgtggtcacgcacataaaatgcgtgtgaccactatttttccacctagttaatcaaataaattt 33249633  T
Q  465 tggaaaaataatggtcac 482  Q
    || |||| || |||||||    
T  33249632 tgaaaaagtagtggtcac 33249615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 380 - 488
Target Start/End: Original strand, 14351069 - 14351178
Alignment:
Q  380 accactatttagaagctgaaa-atgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatgg 478  Q
    |||||||||| |||||| ||| ||||| ||||||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||  |||||| |||    
T  14351069 accactattttgaagctaaaagatgtgatcacgcaactaaaatgtccatgaccactatttttccacttagttaaccaaataaattttgtcaaaatagtgg 14351168  T
Q  479 tcacgcaact 488  Q
    ||||||||||    
T  14351169 tcacgcaact 14351178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 463
Target Start/End: Complemental strand, 33179918 - 33179777
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 421  Q
    |||||||| | ||||| ||||||||||| | ||| | || || ||||||| || |||||||||||||||||  |||||| ||||| ||| ||||||||||    
T  33179918 gaaaattttaattaactaaatatatggtatgtgttaccatatcttttcagctgcgtgaccactatttagaaagtgaaaaatgtggccacacaactaaaat 33179819  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||| ||||||| ||||||||||||||||||| ||||||||||    
T  33179818 gcgtgtgaccactatttttccacttagttaatcaaataaatt 33179777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 472
Target Start/End: Original strand, 2433667 - 2433811
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    ||||||||| |||| ||||||||||    |||||| ||||||||| ||||||  |||||||||||||||||||||||| |||||||| | ||  ||||||    
T  2433667 aaaatttcaattaatcaaatatatg----atgtgatcacattttttcagttgtttgaccactatttagaagctgaaaaatgtggtcatgaaaa-aaaatg 2433761  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 472  Q
    | |||||||| ||||||| ||||| ||||||||||||||||||| |||||    
T  2433762 cacgtgaccactattttttcactttgttaaccaaataaattatgaaaaaa 2433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 1966778 - 1966841
Alignment:
Q  323 tgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccacta 386  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||    
T  1966778 tgaaaatttcagttaaccaaatatatggtctgtgtgaccacattttttagttgcgtgaccacta 1966841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 24669210 - 24669274
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    ||||| |||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||    
T  24669210 aaaatatggtcacgcaactaaaattcgtgtgaccactattttttcacttagttaaccaaataaat 24669274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 25007690 - 25007626
Alignment:
Q  295 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtga 359  Q
    ||||||| |||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  25007690 ttaatgtatacaccctttgtaccattctcgaaaatttcagttaaccaaatatatggtctatgtga 25007626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 19596977 - 19596902
Alignment:
Q  295 ttaatgtgtaca-ccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    |||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||   ||||| |||||||||    
T  19596977 ttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttt 19596902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 24669336 - 24669270
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattta 390  Q
    ||||||| |||||| |||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  24669336 aaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactattta 24669270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 42908730 - 42908666
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 389  Q
    ||||||| ||||||||||||||||||| | ||||| ||||||||| ||||| || ||||||||||    
T  42908730 aaaatttaagttaaccaaatatatggtatgtgtgaccacattttttagttgagtcaccactattt 42908666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 1967015 - 1966979
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa 401  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1967015 tttttcagttgcgtgaccactatttagaagctgaaaa 1966979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 17633288 - 17633332
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  17633288 aaaattttagttaaccaaatatatggtctgtgtgaccacattttt 17633332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 9810957 - 9810882
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    |||||||||| |||| ||||||| | | | |||| ||| ||||||||||||||||||||| ||||| |||||||||    
T  9810957 ttaatgtgtaaacctatttgtaccactctagaaattttaagttaaccaaatatatggtctgtgtgaccacattttt 9810882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 20874825 - 20874880
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaa 419  Q
    ||||||||||| |||| |||| ||||||||||| |||||||||| |||||||||||    
T  20874825 tttttcagttgcgtgatcactttttagaagctgaaaaatgtggtaacgcaactaaa 20874880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 14351217 - 14351160
Alignment:
Q  333 agttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactattt 389  Q
    ||||||||||||||||||| | ||||| || ||||||| ||||| |||||||||||||    
T  14351217 agttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgaccactattt 14351160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 295 - 488
Target Start/End: Original strand, 3823571 - 3823768
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 392  Q
    ||||||||||||||  ||||||| | | | ||||||||||||||||||| |||||||||| ||||| ||||||||| | |||| |||||||||||||| |    
T  3823571 ttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccacattttttctgttgcgtgaccactatttata 3823670  T
Q  393 agctgaaaa---tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||   | ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3823671 agctgaaaaaaatatggtcacgcaactaaaatgcgtgtgaccact-tttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaact 3823768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 324 - 481
Target Start/End: Complemental strand, 42638115 - 42637956
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 421  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42638115 gaaaatttcagttaactaaatatatggtatatatgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaat 42638016  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtca 481  Q
    |||||| |||| |||||||| ||||||||||||||||||||| || ||||||| ||||||    
T  42638015 gcgcgtaaccactatttttcaacttagttaaccaaataaattctgaaaaaatagtggtca 42637956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 295 - 488
Target Start/End: Original strand, 3785882 - 3786078
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 392  Q
    ||||||||||||||  ||||||| | | | ||||||||||||||||||| | |||||||| ||||| ||||||||| | |||  |||||||||||||| |    
T  3785882 ttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccacattttttctgttacgtgaccactatttata 3785981  T
Q  393 agctgaaaa--tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||  | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3785982 agctgaaaaaatatggtcacgcaactaaaatgcgcgtgaccact-tttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaact 3786078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 325 - 481
Target Start/End: Complemental strand, 1705826 - 1705670
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgc 423  Q
    ||||||||||||||||||||| ||| | | ||||| || |||||| ||||| ||||||||||||||||||||||||| | |||||| |||||||||||||    
T  1705826 aaaatttcagttaaccaaatacatgatatgtgtgatcatattttt-agttgcgtgaccactatttagaagctgaaaaatatggtcatgcaactaaaatgc 1705728  T
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtca 481  Q
    ||||||||| ||||||||| ||||||||||||||||| || ||||||| || ||||||    
T  1705727 gcgtgaccactatttttccccttagttaaccaaataatttctggaaaactagtggtca 1705670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 26308794 - 26308633
Alignment:
Q  329 tttcagttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactatttagaagctgaa-aatgtggtcacgcaactaaaatgcgcg 426  Q
    |||||||||| |||||||||||| | ||||  |||||||||| | ||  | ||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  26308794 tttcagttaatcaaatatatggtttgtgtggccacatttttccaattctgggaccactatttagaagctgaataatgtggtcacgcaattaaaatgcgcg 26308695  T
Q  427 tgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||| |||||||||||||| ||||||||||||||| ||||||| || ||||||| |||||    
T  26308694 tgaccactatttttccacttacttaaccaaataaattctggaaaattagtggtcacacaact 26308633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 324 - 488
Target Start/End: Complemental strand, 4169255 - 4169098
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    |||||||||||||||| ||||||||||||||||||| ||||||        | ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  4169255 gaaaatttcagttaactaaatatatggtctatgtgatcacatt--------gcgtgaccactatttagaagctgaaaaatgtggtaacgcaactaaaatg 4169164  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
     ||||||||| |||||||||| ||||||||||||||||||| || ||||||| | |||| ||||||    
T  4169163 tgcgtgaccactatttttccatttagttaaccaaataaattctgaaaaaatagtagtcatgcaact 4169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 328 - 482
Target Start/End: Original strand, 19280152 - 19280307
Alignment:
Q  328 atttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgc 425  Q
    |||| |||||||||||||||||||||  |||| ||||||||| ||| || ||||||||| |||||||| |||||| |||||||||||||||||||| |||    
T  19280152 attttagttaaccaaatatatggtctgagtgaccacattttttcagatgcgtgaccactgtttagaagttgaaaaatgtggtcacgcaactaaaattcgc 19280251  T
Q  426 gtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 482  Q
    ||||||| || ||||||||||||||||||||||||||| || |||| || |||||||    
T  19280252 gtgaccacta-ttttccacttagttaaccaaataaattttgaaaaattagtggtcac 19280307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 19624257 - 19624421
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactatttagaagctgaaa-atgtggtcacgcaactaaaatg 422  Q
    |||||||||||||| ||||||||| ||||| |||| || |||| |||||||| ||||||| |||||| ||||| ||| |||||| ||| |||||||||||    
T  19624257 aaaatttcagttaatcaaatatatagtctaagtgatcatatttcttcagttgtgtgacca-tatttataagctaaaatatgtggccacccaactaaaatg 19624355  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    | |||||||| |||||||||||||||||||||| ||||||| |||||||||  ||||||| |||||    
T  19624356 cacgtgaccactatttttccacttagttaaccacataaattctggaaaaattgtggtcacacaact 19624421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 327 - 480
Target Start/End: Original strand, 44080209 - 44080364
Alignment:
Q  327 aatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgc 423  Q
    ||||||||||||||||||||||  ||| ||||| || ||||||  |||||| |||||||||||||||||| |||||| |||||||||  ||||||||||     
T  44080209 aatttcagttaaccaaatatataatctgtgtgaccatattttttgcagttgcgtgaccactatttagaagttgaaaaatgtggtcaca-aactaaaatgt 44080307  T
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtc 480  Q
    ||||| ||| |||||||||||||||||||||||| ||||| |||||||||| |||||    
T  44080308 gcgtgcccactatttttccacttagttaaccaaaaaaattttggaaaaatagtggtc 44080364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 365 - 488
Target Start/End: Original strand, 31545608 - 31545732
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| |||||||| ||||||||||| |||||||||    
T  31545608 tttttcagttgagtaaccactatttagaagctgaaaaatgtggtcacacaactaaaatgtgcatgaccactatttttctacttagttaacaaaataaatt 31545707  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
     |||||||||| ||||||| |||||    
T  31545708 ctggaaaaatagtggtcacacaact 31545732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 308 - 474
Target Start/End: Complemental strand, 27079470 - 27079303
Alignment:
Q  308 cttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaatgtgg 406  Q
    ||||||| ||| ||| ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||  ||||||| ||||        |||||||||    
T  27079470 cttttgtgctactttagaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattttttcaaaaaaaatgtgg 27079371  T
Q  407 tcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 474  Q
    ||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  27079370 tcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaata 27079303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 308 - 474
Target Start/End: Complemental strand, 27085267 - 27085100
Alignment:
Q  308 cttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaatgtgg 406  Q
    ||||||| ||| ||| ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||  ||||||| ||||        |||||||||    
T  27085267 cttttgtgctactttagaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattttttcaaaaaaaatgtgg 27085168  T
Q  407 tcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 474  Q
    ||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  27085167 tcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaata 27085100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 365 - 488
Target Start/End: Original strand, 22432322 - 22432446
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||||||||||| ||| |||||||||| |||||||||| ||||||||  ||||||||||||| ||| ||| ||||||||||| ||||| ||||||||||||    
T  22432322 tttttcagttgcgtgtccactatttaaaagctgaaaaatgtggtcaatcaactaaaatgcgtgtgtccactatttttccacatagttgaccaaataaatt 22432421  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
    ||| ||||||| |||||| ||||||    
T  22432422 atgaaaaaatagtggtcatgcaact 22432446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 481
Target Start/End: Original strand, 42481304 - 42481409
Alignment:
Q  377 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 475  Q
    |||||||||||||| || ||||||| | ||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  42481304 gtgaccactatttaaaaactgaaaaatatggtcacacaactaaaatgtacgtgaccattatttttctacttagttaaccaaataaattctgaaaaaataa 42481403  T
Q  476 tggtca 481  Q
    ||||||    
T  42481404 tggtca 42481409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 325 - 463
Target Start/End: Complemental strand, 9710876 - 9710742
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    |||||||||||||||||||||||||||     ||| || |||||| | |||| |||||||||| |||||||||||||| |||||||||||||||||| |     
T  9710876 aaaatttcagttaaccaaatatatggt-----tgaccatattttttcggttgcgtgaccactacttagaagctgaaaactgtggtcacgcaactaaa-ta 9710783  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    | | |||||| ||||||||||||||||||||||||||||||    
T  9710782 cacttgaccactatttttccacttagttaaccaaataaatt 9710742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 331 - 488
Target Start/End: Original strand, 5341833 - 5341992
Alignment:
Q  331 tcagttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtg 428  Q
    ||||||||  ||||||||||| | ||||| || ||||||  || || |||||||||||||||||| |||||| ||||||||  |||||||||| |   ||    
T  5341833 tcagttaattaaatatatggtttgtgtgaccatatttttttagctgcgtgaccactatttagaagttgaaaaatgtggtcatacaactaaaatacatatg 5341932  T
Q  429 accattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||| |||||||||||||||||||||||||||||| || ||| |||||||| || |||||    
T  5341933 accactatttttccacttagttaaccaaataaattctgaaaacataatggttacacaact 5341992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 27335479 - 27335402
Alignment:
Q  386 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||||||||||||| ||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  27335479 atttagaagctgaaaaatgtggtcacacaactaaaatacacgtgaccactatttttccacttagttaaccaaataaat 27335402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 431
Target Start/End: Original strand, 11509808 - 11509962
Alignment:
Q  281 gattgatagacacg-ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttggg 377  Q
    |||||||||||||  ||||||||||||||  ||||||| | | || |||||||||  |||||||||||  | | | ||||| ||||||||| || ||| |    
T  11509808 gattgatagacacacttaatgtgtacacccctttgtaccactcttaaaaatttcaaataaccaaatatgcgatttgtgtgaccacattttttcacttgcg 11509907  T
Q  378 tgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgacc 431  Q
    |||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11509908 tgacctttatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgacc 11509962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 13358189 - 13358101
Alignment:
Q  385 tatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 472  Q
    ||||||||||||||||| | ||||||| ||| |||||||||||| |||| ||||||||||| |||||||||||||||||| || |||||    
T  13358189 tatttagaagctgaaaaatatggtcacacaattaaaatgcgcgttaccactatttttccacatagttaaccaaataaattttgaaaaaa 13358101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 447
Target Start/End: Original strand, 23163252 - 23163404
Alignment:
Q  298 atgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt---cagttgggtgaccactatttagaag 394  Q
    ||||||| ||| ||||||| | | | |||||| |||||||| | ||||||||||||||||||  ||||||||   ||||||  |||||||||| |||| |    
T  23163252 atgtgtataccctttgtaccactctcgaaaatatcagttaatctaatatatggtctatgtgactacattttttatcagttgcatgaccactatgtaga-g 23163350  T
Q  395 ctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccactta 447  Q
    ||||||| | ||||||| |||||||||||| ||||| |||||||||| ||||||    
T  23163351 ctgaaaaatatggtcacacaactaaaatgcacgtgatcattattttttcactta 23163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 398 - 488
Target Start/End: Complemental strand, 34627382 - 34627292
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||||||||||||||||| |  || ||||||||||||||| |||||||||||||||||||    ||||||| | |||||||||||    
T  34627382 aaaatgtggtcacgcaactaaaatacatgtaaccattatttttccatttagttaaccaaataaattcgaaaaaaatagtagtcacgcaact 34627292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 487
Target Start/End: Original strand, 27707625 - 27707788
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    |||| |||| |||| |||||||||||| | ||||  ||||||||| || ||| |||||||| |||| ||| || |||| ||||||| | |||||||||||    
T  27707625 aaaaattcaattaatcaaatatatggtttgtgtgcccacattttttcaattgtgtgaccac-attttgaaactaaaaaatgtggtcgcacaactaaaatg 27707723  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaac 487  Q
     || |||||| ||||||| |||||  ||||||||||||||| |||||||||| ||| || |||||    
T  27707724 tgcatgaccactattttttcacttgattaaccaaataaattctggaaaaatagtggacatgcaac 27707788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 11501309 - 11501386
Alignment:
Q  411 gcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |  ||||||| || | ||||||||    
T  11501309 gcaactaaaatgtgcgtgaccactatttttccaattagttaaccaaataaattttaaaaaaatagtgctaacgcaact 11501386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 27365085 - 27365008
Alignment:
Q  386 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||||| ||||||| ||| |||||||| ||||||| || ||||||| |||||||||||||| ||||||||||||||    
T  27365085 atttagaaactgaaaaatgtagtcacgcagctaaaatacgtgtgaccactatttttccacttaattaaccaaataaat 27365008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 39126190 - 39126254
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    |||||||||| |||||||||||| ||||| || || ||||||||||||||||||||||||||||||    
T  39126190 aaaatgtggttacgcaactaaaa-gcgcgcgatcactatttttccacttagttaaccaaataaatt 39126254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 27040760 - 27040683
Alignment:
Q  310 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacac-atttttcagttgggtgaccacta 386  Q
    ||||||||| | | ||||||||| |||||||||||||||| ||| ||||| ||| |||||||||||| ||||||||||    
T  27040760 tttgtactactctagaaaatttcggttaaccaaatatatgatctgtgtgatcacaatttttcagttgcgtgaccacta 27040683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 31545779 - 31545714
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    |||||||||| ||||| |||||||||||||||||| |||| ||||| ||||| |||||||||||||    
T  31545779 aaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagttgtgtgaccactattt 31545714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 3786124 - 3786060
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 389  Q
    |||||| ||||||||||||||||| |||| ||||| ||| ||||| ||||| |||||||||||||    
T  3786124 aaaattccagttaaccaaatatattgtctgtgtgaccacgttttttagttgcgtgaccactattt 3786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 3823814 - 3823750
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 389  Q
    |||||| ||||||||||||||||| |||| ||||| ||| ||||| ||||| |||||||||||||    
T  3823814 aaaattccagttaaccaaatatattgtctgtgtgaccacgttttttagttgcgtgaccactattt 3823750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 27326111 - 27326047
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||||||||||||||||||||| |  ||||||| |||||||||| || |||||| ||||||||    
T  27326111 aaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27326047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 27332348 - 27332284
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||||||||||||||||||||| |  ||||||| |||||||||| || |||||| ||||||||    
T  27332348 aaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27332284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 33488214 - 33488313
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaattt-cagttaaccaaatatatggtctatgtgaacacatttt---tcagttgggtgaccactattt 389  Q
    ||||||||||||||| ||||||||||| |  ||||||| ||||||| ||||||||| |||| ||||| ||||||||   ||||||| |||||||| ||||    
T  33488214 ttaatgtgtacacctctttgtactattctgaaaaattttcagttaatcaaatatatagtctgtgtgatcacattttttttcagttgtgtgaccacaattt 33488313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 11501270 - 11501309
Alignment:
Q  336 taaccaaatatatggtctatgtgaacacatttttcagttg 375  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  11501270 taaccaaatatatggtctgtgtgaccacatttttcagttg 11501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 18733538 - 18733576
Alignment:
Q  424 gcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||| || |||||||||||||||||||||||||||||    
T  18733538 gcgtgagcactatttttccacttagttaaccaaataaat 18733576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 23163787 - 23163837
Alignment:
Q  403 gtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaac 453  Q
    ||||||||||||||||||||  |||||||| ||||| | ||||||||||||    
T  23163787 gtggtcacgcaactaaaatgtacgtgaccactatttcttcacttagttaac 23163837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 41571797 - 41571871
Alignment:
Q  328 atttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaa 401  Q
    |||||||| || |||||||||||| ||||| | |||| ||||||||||  |||||||||||||| ||| ||||||    
T  41571797 atttcagtcaatcaaatatatggtatatgtaaccacattttttcagttacgtgaccactatttaaaagttgaaaa 41571871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 5342039 - 5341995
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    |||||||||||||| | |||||||||||| ||||| |||||||||    
T  5342039 aaaatttcagttaatcgaatatatggtctgtgtgaccacattttt 5341995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 39126359 - 39126263
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    ||||||||||||| | |||||| |||| |  ||||||| ||||||||||||||||| ||| |||||  ||| ||||| ||||| ||||| |||||||    
T  39126359 ttaatgtgtacacttctttgtattattctgaaaaatttaagttaaccaaatatatgatctgtgtgacaacatttttttagttgcgtgactactattt 39126263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 55165096 - 55165144
Alignment:
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaa 471  Q
    |||||||| | ||||||||||||||||||  |||||||||| |||||||    
T  55165096 cgcgtgactactatttttccacttagttattcaaataaattctggaaaa 55165144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 324 - 472
Target Start/End: Original strand, 20556716 - 20556866
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 421  Q
    |||||||||||||||||||||||||||||  ||||| || |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20556716 gaaaatttcagttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaat 20556815  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 472  Q
     |||||||||| |||||||||||||||||||||||||||||| || |||||    
T  20556816 acgcgtgaccaatatttttccacttagttaaccaaataaattctgaaaaaa 20556866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 324 - 488
Target Start/End: Original strand, 18312777 - 18312942
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatttagaagctgaaaatgtggtcacgcaactaaaatg 422  Q
    |||||||||| |||| |||||||||||||| ||||| ||||| |||||||||| || || ||||||||||||||||||||||| ||||||||||||||||    
T  18312777 gaaaatttcaattaatcaaatatatggtctctgtgaccacatattttcagttgcgtcactactatttagaagctgaaaatgtgctcacgcaactaaaatg 18312876  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |  ||||||| ||||||||||||||||||||| |||||||| | |||||||| |||||||||||||    
T  18312877 catgtgaccactatttttccacttagttaacctaataaattcttgaaaaatagtggtcacgcaact 18312942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 31303404 - 31303569
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    ||||||||||| ||||||||| |||||||  |||| ||||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  31303404 aaaatttcagtcaaccaaatacatggtctgcgtgaccacattttttcaattgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatg 31303503  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
     ||||||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  31303504 tgcgtgaccactatttttccacttagttaaccaaataaattctggaaacatagtggtcacgcaact 31303569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 322 - 488
Target Start/End: Original strand, 21548401 - 21548568
Alignment:
Q  322 ttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaa 419  Q
    ||||||||||||||||| |||| ||||||| | ||||| || |||||| |||||| ||||||| |||||| |||||||||| |||||||||||||||  |    
T  21548401 ttgaaaatttcagttaatcaaa-atatggtatgtgtgaccatattttttcagttgtgtgaccaatatttaaaagctgaaaaatgtggtcacgcaactcga 21548499  T
Q  420 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||| |||| | |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  21548500 atgcgcgtaaccactgtttttccacttagttaaccaaataaattctggaaaaatagtggtcacgcaact 21548568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 21589574 - 21589739
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    ||||||| ||| || ||||||||| |||||||||| || |||||| |||||| |||| |||||||||||||||||||| |||||||| ||||||||||||    
T  21589574 aaaattttagtcaatcaaatatattgtctatgtgaccatattttttcagttgtgtgatcactatttagaagctgaaaaatgtggtcatgcaactaaaatg 21589673  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    || ||||||| |||||||||||||| |||| ||||||| || |||||||||| |||||| ||||||    
T  21589674 cgtgtgaccactatttttccacttaattaatcaaataagttctggaaaaatagtggtcatgcaact 21589739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 343 - 488
Target Start/End: Original strand, 4290796 - 4290942
Alignment:
Q  343 atatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattattttt 440  Q
    ||||||||| ||| ||| ||||||||| |||||| |||||||||||||||||| |||||| |||||||||||||||||  || ||||||||| |||||||    
T  4290796 atatatggtttatctgaccacattttttcagttgagtgaccactatttagaagttgaaaaatgtggtcacgcaactaag-tgtgcgtgaccactattttt 4290894  T
Q  441 ccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||||||||||||||||| || |||| || |||||||||||||    
T  4290895 ccacttagttaaccaaataaattctgaaaaactagtggtcacgcaact 4290942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 324 - 486
Target Start/End: Complemental strand, 22740818 - 22740654
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaa 420  Q
    |||||||||| ||||| |||||||| || | ||| | |||||||||  |||||| ||||||| |||||| |||||||||| | |||||||||||||||||    
T  22740818 gaaaatttcaattaactaaatatatagtttgtgtaaccacatttttttcagttgtgtgacca-tatttaaaagctgaaaaatatggtcacgcaactaaaa 22740720  T
Q  421 tgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaa 486  Q
    |  |||||| ||||||||||||||||||||||||||||||||| || ||||||| | |||||||||    
T  22740719 tatgcgtgatcattatttttccacttagttaaccaaataaattctgaaaaaatagtagtcacgcaa 22740654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 310 - 488
Target Start/End: Complemental strand, 5083964 - 5083785
Alignment:
Q  310 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctg-aaaatgtggt 407  Q
    |||||| |||| | |||||||||| || | |||||||||||| | ||||| ||||||||| || ||| |||||||||||||||||| || ||||| ||||    
T  5083964 tttgtattattctcgaaaatttcaattcatcaaatatatggtatgtgtgaccacattttttcaattgcgtgaccactatttagaagttgaaaaatatggt 5083865  T
Q  408 cacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||| ||||||| ||||||| |||||||| |||| |||||| ||||||||| | |||||||| |||||||| ||||    
T  5083864 cacgcaact-aaatgcgggtgaccactatttttcaactttgttaacgaaataaattctagaaaaatagtggtcacgtaact 5083785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 28805094 - 28804983
Alignment:
Q  377 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 475  Q
    |||| |||||||||||||||||||| ||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||     
T  28805094 gtgatcactatttagaagctgaaaaatgtggtcacacaaccaaaatgcgcg-gaccactatttttccacttagttaaccaaataaattatggaaatatag 28804996  T
Q  476 tggtcacgcaact 488  Q
    ||||||| |||||    
T  28804995 tggtcacacaact 28804983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 325 - 488
Target Start/End: Complemental strand, 15958472 - 15958306
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgc 423  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||| |||||  ||| |||||||||||||||| ||||||||||||||||| | |||||     
T  15958472 aaaatttcagttaactaaatatatggtctgtgtgaccacatttttaagttgcatga-cactatttagaagctgaaaaatgtggtcacgcaa-ttaaatgt 15958375  T
Q  424 gcgtgacca----ttatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||| ||    || |||||  ||||| ||||||||||||||| || ||||||| ||||||| |||||    
T  15958374 gcgtgatcacaatttttttttttacttatttaaccaaataaattctgaaaaaatagtggtcacacaact 15958306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 46943839 - 46943761
Alignment:
Q  386 atttagaagctgaaaatgtggtcacgcaactaaaatgcgcgtgaccatta--tttttccacttagttaaccaaataaat 462  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||    
T  46943839 atttagaagctgaaaatgtgatcacgcaactaaaatgcgcgtgaccactattttttttcacttagttaaccaaataaat 46943761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 28804902 - 28804977
Alignment:
Q  295 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    ||||| |||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  28804902 ttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacattttt 28804977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 327 - 462
Target Start/End: Original strand, 32964706 - 32964852
Alignment:
Q  327 aatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt----------agaagctgaaaa-tgtggtcacgcaac 415  Q
    ||||| ||||||| ||||||||||| | ||||| || |||||||| ||| |||||||||||||          |||||||||||| | |||||| | |||    
T  32964706 aatttaagttaactaaatatatggtatgtgtgaccatatttttcaattgtgtgaccactattttccagcatttagaagctgaaaaatatggtcatgtaac 32964805  T
Q  416 taaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||||| |||||||| |||||||||||||| |||||| |||||||    
T  32964806 taaaatgcacgtgaccactatttttccacttaattaacctaataaat 32964852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 5083739 - 5083803
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 389  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||| ||||  |||||||||||||    
T  5083739 aaaatttcagttaatcaaatatatggtctttgtgaccacattttttagttacgtgaccactattt 5083803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 22033253 - 22033158
Alignment:
Q  295 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    |||||||||||| | ||||||| ||| |  ||||||| ||||||||||||||||||||| ||||| || | ||||| ||||| |||||||||||||    
T  22033253 ttaatgtgtacatcctttgtaccattctgaaaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactattt 22033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 31303615 - 31303553
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactat 387  Q
    ||||||||||||||| ||||||||||| | ||||| ||||||||| ||||| |||||||||||    
T  31303615 aaaatttcagttaacaaaatatatggtatgtgtgaccacattttttagttgcgtgaccactat 31303553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 5174910 - 5174978
Alignment:
Q  416 taaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgc 484  Q
    ||||||| ||||||||| ||||||| ||||||||||| |||||||||| || |||| || |||||||||    
T  5174910 taaaatgtgcgtgaccactatttttacacttagttaatcaaataaattctgaaaaattagtggtcacgc 5174978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 22032981 - 22033055
Alignment:
Q  295 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    |||||||||||| | ||||||| | | || ||||||| ||||||||||||||||||| | ||||| |||||||||    
T  22032981 ttaatgtgtacatcctttgtaccactctttaaaatttaagttaaccaaatatatggtatgtgtgaccacattttt 22033055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 15958259 - 15958324
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    ||||||| ||||||||||||||||||||  ||||| |||| ||||| ||||| |||||||||||||    
T  15958259 aaaatttaagttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattt 15958324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 21548615 - 21548550
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactattt 389  Q
    ||||||||||||||| ||||||||||||| ||||| || |||| || ||||| |||||||||||||    
T  21548615 aaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactattt 21548550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 21589786 - 21589721
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    ||||||||||||| ||||||||||||||| ||||| |||| ||||| |||||  ||||||||||||    
T  21589786 aaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccactattt 21589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 2887230 - 2887188
Alignment:
Q  379 gaccactatttagaagctg-aaaatgtggtcacgcaactaaaa 420  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  2887230 gaccactatttagaagctgaaaaatgtggttacgcaactaaaa 2887188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 32964914 - 32964848
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactattta 390  Q
    ||||||| ||||||| | ||||||||||| ||||| ||||| |||| ||||| ||||||||||||||    
T  32964914 aaaatttaagttaactatatatatggtctgtgtgaccacatatttttagttgcgtgaccactattta 32964848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 28805181 - 28805116
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    ||||||| ||||||||||||||||||| | ||||| |||| ||||||||||| |||| ||| ||||    
T  28805181 aaaatttaagttaaccaaatatatggtatgtgtgaccacattttttcagttgcgtgatcacgattt 28805116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 27523552 - 27523496
Alignment:
Q  416 taaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 472  Q
    ||||||| || |||| | |||||||||||||| ||||||||||||||| || |||||    
T  27523552 taaaatgtgcttgactactatttttccacttaattaaccaaataaattctgaaaaaa 27523496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 281 - 488
Target Start/End: Original strand, 3222337 - 3222548
Alignment:
Q  281 gattgatagacacg-ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggt 378  Q
    |||||||||||||  |||||||||||||| |||||| || | || |||||||||  |||||||||||||||| | ||||| ||||||||| |||||| ||    
T  3222337 gattgatagacacccttaatgtgtacaccctttgtattactcttaaaaatttcaaataaccaaatatatggtgtctgtgaccacattttttcagttgcgt 3222436  T
Q  379 gaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaa-ataat 476  Q
    |||||||||||| | |||||||| || ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||| ||||||| ||| |    
T  3222437 gaccactatttaaatgctgaaaaatgcggtcacgcaactaaaatgtacgtgaccactatttttccacttagttaaccaaataaattctggaaaatatagt 3222536  T
Q  477 ggtcacgcaact 488  Q
    ||||||| ||||    
T  3222537 ggtcacgtaact 3222548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 325 - 488
Target Start/End: Complemental strand, 33815174 - 33815008
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    |||| |||| ||||| |||||||| |||| ||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33815174 aaaacttcaattaactaaatatatagtctgtgtgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatg 33815075  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa-tggtcacgcaact 488  Q
    ||||||||||  ||||||||||||||||||||||||||||| || ||||| || ||||| |||||||    
T  33815074 cgcgtgaccaccatttttccacttagttaaccaaataaattctgaaaaaaaaagtggtcgcgcaact 33815008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 324 - 486
Target Start/End: Complemental strand, 10304859 - 10304695
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 421  Q
    |||||||| ||| ||| ||||||||||||| ||||| ||||||||| |||||| |||| |||||||||||||| ||||| |  |||||||||||||||||    
T  10304859 gaaaattttagtgaactaaatatatggtctgtgtgaccacattttttcagttgcgtgatcactatttagaagcagaaaaatacggtcacgcaactaaaat 10304760  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaa 486  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||||||| | |||||||||||    
T  10304759 gcgcgtgaccactattttttcacttagttaaccaaataaattctggaaaaaaagtggtcacgcaa 10304695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 22608312 - 22608476
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgc 423  Q
    ||||||| ||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||     
T  22608312 aaaattttagttaaccaaatatatggtctgtgtgactacatttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgt 22608411  T
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    || |||||| |||||||  | |||||||| ||||||| || || |||| || |||||||||||||    
T  22608412 gcatgaccactattttttgaattagttaatcaaataatttctgaaaaattagtggtcacgcaact 22608476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 486
Target Start/End: Complemental strand, 3620932 - 3620755
Alignment:
Q  310 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtc 408  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||| || ||| ||| |||||| | | |||| ||||||||||||| || |||||||| ||    
T  3620932 tttgtactattttcgaaaatttcagttaatcaaatatgtggtctgtgcgaatacaattttcaatcgcgtgatcactatttagaagttgaaaaatgtgatc 3620833  T
Q  409 acgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaa 486  Q
    || ||||||||||    ||||||| ||||||| |||||||||||||||||||||| || ||||||| ||||| |||||    
T  3620832 acacaactaaaatatatgtgaccactattttttcacttagttaaccaaataaattctgaaaaaatagtggtcgcgcaa 3620755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 138820 - 138708
Alignment:
Q  377 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 475  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||| |||||||||||||||| ||||||||||||| || |||||||     
T  138820 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 138721  T
Q  476 tggtcacgcaact 488  Q
    |||||||||||||    
T  138720 tggtcacgcaact 138708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 146841 - 146729
Alignment:
Q  377 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 475  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||| |||||||||||||||| ||||||||||||| || |||||||     
T  146841 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 146742  T
Q  476 tggtcacgcaact 488  Q
    |||||||||||||    
T  146741 tggtcacgcaact 146729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 308 - 488
Target Start/End: Original strand, 2834884 - 2835078
Alignment:
Q  308 cttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactattt-----------agaag 394  Q
    |||||||| |||||| |||||||| |||||| ||||||||||||||  | || |||||||||  |||||| || ||||||||||           | |||    
T  2834884 cttttgtattattttggaaaatttaagttaatcaaatatatggtctgcgggatcacatttttttcagttgtgtaaccactatttttttagtatttaaaag 2834983  T
Q  395 ctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| || |||||    
T  2834984 ctgaaaaatatggtcatgcaactaaaatacgcgtgaccattatttttccacttagctaactaaataaattatggaaaaatagtggttacacaact 2835078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 378 - 488
Target Start/End: Original strand, 9068411 - 9068521
Alignment:
Q  378 tgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataat 476  Q
    ||||||||||||| |||||||||| ||||||||| || |||||||||||||||  | ||||||||||||||| ||| ||||||| || |||||||||| |    
T  9068411 tgaccactatttaaaagctgaaaaatgtggtcacacatctaaaatgcgcgtgattactatttttccacttag-taaacaaataagttctggaaaaatagt 9068509  T
Q  477 ggtcacgcaact 488  Q
    ||||||||||||    
T  9068510 ggtcacgcaact 9068521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 482
Target Start/End: Original strand, 23595074 - 23595254
Alignment:
Q  295 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttaga 392  Q
    |||||||||||||| |||||||  | | | |||||||| ||||||| ||||||||||||| ||||| || | ||||| ||||| ||||| ||||||||||    
T  23595074 ttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccatatttttttagttgtgtgacaactatttaga 23595173  T
Q  393 agctg-aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 482  Q
    ||||| ||||||||||||  |||        |||||| ||| |||||||||||||||||||| ||||||||| || |||| || |||||||    
T  23595174 agctgaaaaatgtggtca--caa--------cgcgtggccactatttttccacttagttaacaaaataaattctgaaaaattagtggtcac 23595254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 2430664 - 2430600
Alignment:
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||| ||||||    
T  2430664 gcgtgaccactatttttccacttagttaaccaaataaattctgaaaaaatagtggtcatgcaact 2430600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 30056072 - 30056116
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  30056072 aaaatttcagttaaccaaatatatggtctatgtgaccacattttt 30056116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 461
Target Start/End: Original strand, 9474656 - 9474718
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaa 461  Q
    |||||||||||||| || ||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  9474656 aaaatgtggtcacgaaa-taaaatgcgtgtgaccactattttttcacttagttaaccaaataaa 9474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 2430721 - 2430650
Alignment:
Q  318 atttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    |||||||||||| || |||||||||||||||||| | ||||| |||| ||||||||||| |||||||||||||    
T  2430721 atttttgaaaatctc-gttaaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactattt 2430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 7706862 - 7706926
Alignment:
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||| ||||||||||||||  ||||||||||| || |||||||||| | |||||||||||    
T  7706862 gcgtgaccactatttttccacttaagtaaccaaataagttctggaaaaatagttgtcacgcaact 7706926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 10304647 - 10304707
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccact 385  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||| | ||| |||||||||    
T  10304647 aaaatttcagttaaccaaatatatggtctgtgtgaccacactttttaattgcgtgaccact 10304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 11108116 - 11108163
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcag 372  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  11108116 aaaatttcaattaaccaaatatatggtctgtgtgaccacatttttcag 11108163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 9068599 - 9068503
Alignment:
Q  295 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 389  Q
    |||||||||||||| |||||||| | | |  ||||||| |||||| |||||||||||| | ||||| |||| ||||| ||||| |||||||||||||    
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactattt 9068503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 375
Target Start/End: Original strand, 9068343 - 9068394
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttg 375  Q
    |||||| |||||||||||| |||||||||| | ||| |||||||||||||||    
T  9068343 gaaaatatcagttaaccaagtatatggtctgtatgaccacatttttcagttg 9068394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 7706779 - 7706876
Alignment:
Q  295 ttaatgtgtaca-ccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttt--tcagttgggtgaccactattt 389  Q
    |||||||||||| |||||||||| ||| |  ||||||| ||||||   |||||||||| | ||||| ||||||||  ||||||| |||||||||||||    
T  7706779 ttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccacatttttttcagttgcgtgaccactattt 7706876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 138669 - 138726
Alignment:
Q  333 agttaaccaaatatatggtctatgtgaacacatttt-tcagttgggtgaccactattt 389  Q
    ||||||||||||||||||||| ||||  |||||||| | ||||| |||||||||||||    
T  138669 agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattt 138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 146690 - 146747
Alignment:
Q  333 agttaaccaaatatatggtctatgtgaacacatttt-tcagttgggtgaccactattt 389  Q
    ||||||||||||||||||||| ||||  |||||||| | ||||| |||||||||||||    
T  146690 agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattt 146747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 2430554 - 2430618
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 389  Q
    ||||||||||||||| ||||||||| ||| ||||| ||  ||||| |||||  ||||||||||||    
T  2430554 aaaatttcagttaactaaatatatgatctgtgtgaccattttttttagttgcatgaccactattt 2430618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 7915756 - 7915696
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacac-atttttcagttgggtgaccac 384  Q
    |||||||||||||| ||||||||| |||| ||||| ||| |||||| ||||| ||||||||    
T  7915756 aaaatttcagttaatcaaatatatcgtctgtgtgaccacaattttttagttgcgtgaccac 7915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 23595304 - 23595260
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    ||||||||| |||||||||||||| |||| ||||| |||||||||    
T  23595304 aaaatttcaattaaccaaatatatagtctgtgtgaccacattttt 23595260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 24386374 - 24386334
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacat 365  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  24386374 aaaatttaagttaaccaaatatatggtctgtgtgaccacat 24386334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 363 - 202
Alignment:
Q  329 tttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcg 426  Q
    ||||||||||||||||||||||||| ||||  |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  363 tttcagttaaccaaatatatggtctgtgtggccacactttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgca 264  T
Q  427 tgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||| |||||||||||||| ||| |||||||| || || |||| || |||||||||||||    
T  263 tgaccactatttttccacttacttatccaaataatttttgaaaaattagtggtcacgcaact 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 155 - 217
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatt-tttcagttgggtgaccacta 386  Q
    |||||||||||||||||||||||||| || ||||| |||||| ||| ||||| ||||||||||    
T  155 aaaatttcagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgaccacta 217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 325 - 488
Target Start/End: Complemental strand, 5322120 - 5321955
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||| || ||| |||| || ||||||||||||||||| | || ||||||||||||||||    
T  5322120 aaaatttcaattaaccaaatatatggtctgtgtgatcacattttttcaattgcgtgatcattatttagaagctgaaaaatatgatcacgcaactaaaatg 5322021  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||| |||||||||||||||||||||||||||||| |  ||||||| |||||||||||||    
T  5322020 cgcgtgaccactatttttccacttagttaaccaaataaattctaaaaaaatagtggtcacgcaact 5321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 325 - 485
Target Start/End: Complemental strand, 38606986 - 38606824
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    ||||||||||||||| | ||||||||| |  |||| ||||||||| |||||| || |||||||||||||||||||||| |||||||||||||| ||||||    
T  38606986 aaaatttcagttaactacatatatggtttgcgtgaccacattttttcagttgcgttaccactatttagaagctgaaaaatgtggtcacgcaacgaaaatg 38606887  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgca 485  Q
    || ||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  38606886 cgtgtgaccactatttttccacttagttaaccaaataaattctggaaacatagtggtcacgca 38606824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 295 - 460
Target Start/End: Complemental strand, 29367243 - 29367076
Alignment:
Q  295 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaa 393  Q
    ||||||||||||||  |||||  | | |||||||||| | ||||| ||||||||||||||||| | || |||||| || ||| ||||||||||||| |||    
T  29367243 ttaatgtgtacaccccttgtatcactcttgaaaattttaattaactaaatatatggtctatgtaaccatattttttcaattgtgtgaccactattttgaa 29367144  T
Q  394 gctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataa 460  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29367143 gctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataa 29367076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 299 - 486
Target Start/End: Original strand, 5573704 - 5573893
Alignment:
Q  299 tgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagct 396  Q
    |||||||||| |||||||  ||| | ||| |||||||||||||||||||||| | |||||||  |||||||| || ||| |||||||||||||||||| |    
T  5573704 tgtgtacacccttttgtatcattctcgaacatttcagttaaccaaatatatgatatatgtgactacattttttcaattgcgtgaccactatttagaagtt 5573803  T
Q  397 gaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaa 486  Q
    ||||| |||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  5573804 gaaaaatgtggtcatggaactaaaatgcacgtgaccactatttttccacttagttaaccaaataaatt-ttgaaaaatagtggtcacgcaa 5573893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 365 - 488
Target Start/End: Complemental strand, 1241017 - 1240894
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||| |||||| |||||||||||||||||||||||    
T  1241017 tttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgcgtgaccactattttcccacttagttaaccaaataaatt 1240919  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
    ||||||||||| ||||||| |||||    
T  1240918 atggaaaaatagtggtcacacaact 1240894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 295 - 488
Target Start/End: Complemental strand, 1251665 - 1251470
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 392  Q
    ||||||||||||||  ||||||| | | | |||||||||||||||| ||||||||| | | || || ||||||||| |||||| |||||||||||||| |    
T  1251665 ttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatgatttgtgagaccacattttttcagttgcgtgaccactatttaaa 1251566  T
Q  393 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    | ||||||| |||| ||| | |||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1251565 acctgaaaaatgtgatcatg-aactaaaatgtgcgcgaccactattttcccacttagttaaccaaataaattatggaaaaatagtggtcacgcaact 1251470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 331 - 488
Target Start/End: Complemental strand, 15714847 - 15714688
Alignment:
Q  331 tcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtg 428  Q
    ||||||||| ||||||||||||| ||| | ||||||||| ||| || ||||| |||||||| |||||||||| | |||||||| ||||||||||  ||||    
T  15714847 tcagttaactaaatatatggtctgtgtaaccacattttttcagctgtgtgactactatttaaaagctgaaaaatatggtcacgtaactaaaatgtccgtg 15714748  T
Q  429 accattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||| ||||||||||||||||||||||||||||||  | ||||||| |||||||||||||    
T  15714747 accactatttttccacttagttaaccaaataaatttcgaaaaaatagtggtcacgcaact 15714688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 488
Target Start/End: Complemental strand, 26493507 - 26493330
Alignment:
Q  310 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggt 407  Q
    ||||||| | |||| ||||||||| ||||||||||||||  | | ||||| ||||||||| |||||| || || ||||||||||||||||||| ||||||    
T  26493507 tttgtaccacttttaaaaatttcaattaaccaaatatat--tttgtgtgatcacattttttcagttgtgtaactactatttagaagctgaaaaatgtggt 26493410  T
Q  408 cacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||||| |||||||||| | |||||||||| |||||||| |||||||||| || |||| |||||||| |||||||    
T  26493409 cacgcaactaaa-tgcgcgtgacaactatttttccatttagttaatcaaataaattctgaaaaattaatggtcgcgcaact 26493330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 295 - 488
Target Start/End: Original strand, 31596715 - 31596911
Alignment:
Q  295 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 392  Q
    ||||| ||||||||| ||||||| | |||  |||||| ||||||| |||||||||||| | ||||| ||||||||| |||||| || |||||||||||||    
T  31596715 ttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatatggtatgtgtgaccacattttttcagttgcgttaccactatttaga 31596814  T
Q  393 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa-taatggtcacgcaact 488  Q
    || |||||| ||||||||  |||||||| |||| || | || |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  31596815 agatgaaaaatgtggtcagacaactaaa-tgcgtgtaatcactatttttccacttaattaaccaaataaattatggaaaaactaatggtcacacaact 31596911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 295 - 488
Target Start/End: Complemental strand, 31273751 - 31273555
Alignment:
Q  295 ttaatgtgtacacctttt-gtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatttaga 392  Q
    |||||||||| ||||||| |||| | | | |||||||||| |||| |||||||||||||||||||  ||||| |||||||||| |||||| |||||||||    
T  31273751 ttaatgtgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatatggtctatgtggccacatgttttcagttgcgtgacccctatttaga 31273652  T
Q  393 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||| | |||||| ||| ||||||||| ||||| |  ||||||| |||| ||||||||||||||||| |  ||||||  || ||||||||||    
T  31273651 agctgaaaaatatggtcatgcagctaaaatgcacgtgaacgctattttttcactaagttaaccaaataaattcttaaaaaatggtgatcacgcaact 31273555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 462
Target Start/End: Original strand, 15233169 - 15233318
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt-----------agaagctgaaaat-gtggtcacgc 412  Q
    |||||||||||||| |||||||||||||| || || ||||||||||||||  |||||||||||||           | ||| ||||||  ||||||||||    
T  15233169 aaaatttcagttaatcaaatatatggtctctgcgatcacatttttcagttacgtgaccactatttttccagcatttaaaagttgaaaaacgtggtcacgc 15233268  T
Q  413 aactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    ||||||||||||| |||||| ||||||| |||||| ||||||||||||||    
T  15233269 aactaaaatgcgcatgaccactattttttcacttaattaaccaaataaat 15233318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 33286178 - 33286263
Alignment:
Q  335 ttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaa 418  Q
    |||||||||||||||||||  |||| ||||||||| || ||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  33286178 ttaaccaaatatatggtctgcgtgaccacattttttcaattgcgtgaccactttttagaagctgaaaaatgtggtcacgcaactaa 33286263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 26914748 - 26914684
Alignment:
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||||||||||||||| | ||||||||||||||| | |||||||| |||||||| ||||    
T  26914748 gcgtgaccattatttttccactcaattaaccaaataaattcttgaaaaatagtggtcacgtaact 26914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 28700176 - 28700240
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||| | |||| ||| ||||||||  |||||||||||||||| ||||||||||||||||||||    
T  28700176 aaaatgcgatcacacaattaaaatgcaagtgaccattatttttctacttagttaaccaaataaat 28700240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 481
Target Start/End: Complemental strand, 24575962 - 24575907
Alignment:
Q  426 gtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtca 481  Q
    ||||||| ||||||| |||||| ||||||||||||||| |||||||||| ||||||    
T  24575962 gtgaccactattttttcacttatttaaccaaataaattctggaaaaatagtggtca 24575907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 6809821 - 6809898
Alignment:
Q  398 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatg-gaaaaata 474  Q
    |||||||||| || | |||||||| |  ||||||| |||||||||| ||| |||||||||||||||||| ||||||||    
T  6809821 aaaatgtggttactcgactaaaatacatgtgaccactatttttccatttaattaaccaaataaattatgagaaaaata 6809898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 482
Target Start/End: Complemental strand, 24538078 - 24537981
Alignment:
Q  385 tatttagaagctgaaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 482  Q
    |||||||||||| ||||| |||||| | ||||  || ||| || |||| ||||||||||  | |||||||||||||||| ||||||| || |||||||    
T  24538078 tatttagaagctaaaaatatggtcatgtaactgcaacgcgtgttaccactatttttccatatggttaaccaaataaattttggaaaattagtggtcac 24537981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 443
Target Start/End: Original strand, 32959496 - 32959631
Alignment:
Q  310 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggt 407  Q
    ||||||| ||| | |||| ||||  ||||||||||| ||| | | ||||| ||||||||| || ||  |||||||| ||| ||||||| |||| | ||||    
T  32959496 tttgtacaattatggaaattttcgattaaccaaatacatgatttgtgtgatcacattttttcaattacgtgaccaccattaagaagctaaaaaatatggt 32959595  T
Q  408 cacgcaactaaaatgcgcgtgaccattatttttcca 443  Q
    ||| ||||||||||| | ||||||| ||||||||||    
T  32959596 cacacaactaaaatgtgtgtgaccactatttttcca 32959631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 15714641 - 15714706
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttt-tcagttgggtgaccactattt 389  Q
    ||||||||||||| | ||||||||| | ||||||| |||||||| | ||||| |||||||||||||    
T  15714641 aaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgaccactattt 15714706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 24576248 - 24576184
Alignment:
Q  296 taatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtga 359  Q
    |||||||||||||  ||||||| | | | |||||||||| ||||||||||||||||||| |||||    
T  24576248 taatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtctgtgtga 24576184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 365 - 488
Target Start/End: Complemental strand, 29677202 - 29677078
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  29677202 tttttcagttgagtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaatt 29677103  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
     || ||||||| |||||| ||||||    
T  29677102 ctgaaaaaatagtggtcatgcaact 29677078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 324 - 488
Target Start/End: Original strand, 34364183 - 34364347
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaa-atgtggtcacgcaactaaaatg 422  Q
    |||||||| ||||||| ||||||||||||| ||||| || |||||||||||| ||| ||| |||||||||||||||| |||||||||| |||||||||||    
T  34364183 gaaaatttaagttaactaaatatatggtctgtgtgaccatatttttcagttgcgtggcca-tatttagaagctgaaacatgtggtcacacaactaaaatg 34364281  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
      ||||||||  |||||| |||||||||||||||| ||||| |||||||||||||||||| |||||    
T  34364282 aacgtgaccacaattttttcacttagttaaccaaaaaaattctggaaaaataatggtcacacaact 34364347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 488
Target Start/End: Original strand, 38951854 - 38952023
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa---tgtggtcacgcaactaa 418  Q
    |||||||| ||||||||||||||||||||||||  | |||||||||  ||| || ||||||||||||||||| |||||||   | | |||||||||||||    
T  38951854 gaaaatttaagttaaccaaatatatggtctatgaaaccacatttttttcagctgcgtgaccactatttagaaactgaaaaaaatatagtcacgcaactaa 38951953  T
Q  419 aatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||  |||||| |||||||| ||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  38951954 aatgcgtctgaccactatttttctacttagttaaccaaataaattttggagaaatagtggtcaagcaact 38952023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 34490140 - 34490304
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 422  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||  ||||||||||||||||||| |||| |||||||| |||| |||||||    
T  34490140 aaaatttcagttaactaaatatatggtctgtgtga-cacattttttcagttgtatgaccactatttagaagctaaaaaatgtggtcatgcaa-taaaatg 34490237  T
Q  423 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa-taatggtcacgcaact 488  Q
    ||| |||||| |||||||| | ||||||||||||||||||| || ||||| || |||||||||||||    
T  34490238 cgcatgaccactatttttctagttagttaaccaaataaattctgaaaaaactagtggtcacgcaact 34490304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 333 - 463
Target Start/End: Original strand, 25238436 - 25238567
Alignment:
Q  333 agttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgac 430  Q
    ||||||| ||||||||||||||| ||| || |||||| |||||| |||||||||||||||||||| |||| |||||||||| || ||||||| |||| ||    
T  25238436 agttaactaaatatatggtctatatgatcaaattttttcagttgcgtgaccactatttagaagctaaaaaatgtggtcacgtaa-taaaatgtgcgtaac 25238534  T
Q  431 cattatttttccacttagttaaccaaataaatt 463  Q
    || ||||||||||||||||||||||||||||||    
T  25238535 cactatttttccacttagttaaccaaataaatt 25238567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 365 - 488
Target Start/End: Complemental strand, 29167926 - 29167803
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    ||||||||||| |||||||||||||||||||| |||| | ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  29167926 tttttcagttgcgtgaccactatttagaagctaaaaaatatggtcacgcaa-taaaatgcgcatgaccactatttttccacttagttaaccaaataaatt 29167828  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
      | |||| || |||||| ||||||    
T  29167827 ccgaaaaactagtggtcaggcaact 29167803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 365 - 488
Target Start/End: Original strand, 42604210 - 42604334
Alignment:
Q  365 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 463  Q
    |||||||||||  | ||||||||||||||||| |||| | ||||||  ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  42604210 tttttcagttgcatcaccactatttagaagcttaaaagtatggtcatacaactaaaatgcgcgtgaccactatttttccacttagttaacgaaataaatt 42604309  T
Q  464 atggaaaaataatggtcacgcaact 488  Q
     || ||||||| || |||| |||||    
T  42604310 ctgaaaaaatagtgatcacacaact 42604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 281 - 488
Target Start/End: Original strand, 5831438 - 5831648
Alignment:
Q  281 gattgatagacacgttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttt-tcagttgggt 378  Q
    ||||| ||||||| |||||| ||||||| |||||||  ||| |  ||||||| ||||||| ||| ||||||| | ||||| || ||||| |  ||||  |    
T  5831438 gattggtagacactttaatgagtacacccttttgtaacattctgaaaaattttagttaactaaagatatggtatgtgtgatcatattttgtttgttgcat 5831537  T
Q  379 gaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatg 477  Q
    |||||||||||||||| | |||| | ||||| || ||||||||||||  | ||||  ||||||||||||||||||||||||||||| ||||||| || ||    
T  5831538 gaccactatttagaagttaaaaaatatggtcccgtaactaaaatgcgtattaccacaatttttccacttagttaaccaaataaattctggaaaattagtg 5831637  T
Q  478 gtcacgcaact 488  Q
    |||||||||||    
T  5831638 gtcacgcaact 5831648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 2569960 - 2570024
Alignment:
Q  424 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||||    
T  2569960 gcgtgaccactatttttccacttagttaaccaaataaattctagaaaaatagtggtcacgcaact 2570024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 2996025 - 2996101
Alignment:
Q  386 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaa 461  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  2996025 atttagaagctgaaaaatgtggtcacgcaaataaaatgcgcgtggccgctatttttccgcttagttaaccaaataaa 2996101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 9468064 - 9468199
Alignment:
Q  329 tttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgcgcg 426  Q
    ||||||||||||||||||||||| | ||||| || | |||||||||||  |||||| |||||| |||||| |||||||| |||| |||||||||||   |    
T  9468064 tttcagttaaccaaatatatggtatgtgtgaccatattttttcagttgtctgacca-tatttaaaagctgtaaaatgtgatcacacaactaaaatgtatg 9468162  T
Q  427 tgaccattattttt-ccacttagttaaccaaataaat 462  Q
    |||| | ||||||| ||||||||||||||||||||||    
T  9468163 tgactactatttttgccacttagttaaccaaataaat 9468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 461
Target Start/End: Complemental strand, 517570 - 517433
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgc 423  Q
    ||||||| ||||||||||||||||| | | ||  | ||||||||||| ||| || ||||||||||||||| | |||| | || ||||||||||||||||     
T  517570 aaaatttaagttaaccaaatatatgatatgtgcaaccacatttttcaattgcgtaaccactatttagaagttaaaaaatatgatcacgcaactaaaatga 517471  T
Q  424 gcgtgaccattatttttccacttagttaaccaaataaa 461  Q
     | |||| | |||||||  |||||||||||||||||||    
T  517470 acatgactactattttttaacttagttaaccaaataaa 517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 425
Target Start/End: Complemental strand, 9929951 - 9929834
Alignment:
Q  309 ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt----agaagctgaaaatg 403  Q
    |||||||| |||||  ||||||||| ||||| ||||||||||||| ||||| |||| ||||||| ||| |||||||||||||    ||||    || |||    
T  9929951 ttttgtaccattttgaaaaatttcaattaactaaatatatggtctgtgtgaccacattttttcatttgcgtgaccactattttttcagaa----aatatg 9929856  T
Q  404 tggtcacgcaactaaaatgcgc 425  Q
    ||||||||||||||||||||||    
T  9929855 tggtcacgcaactaaaatgcgc 9929834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 5855057 - 5855122
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactattt 389  Q
    |||||||||| |||||||||||||||||| ||||| ||||| |||||||||| |||||||| ||||    
T  5855057 aaaatttcagctaaccaaatatatggtctgtgtgaccacatattttcagttgtgtgaccacaattt 5855122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 29677032 - 29677096
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 389  Q
    ||||||| |||||||||||||||||| || ||||| ||||||||| |||||  ||||||||||||    
T  29677032 aaaattttagttaaccaaatatatggcctgtgtgaccacattttttagttgcatgaccactattt 29677096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 13350903 - 13350978
Alignment:
Q  295 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    |||||||||||||| |||||||| | | | |||||||||||||||||||||||||||| | ||||| ||| |||||    
T  13350903 ttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtgatcacgttttt 13350978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 38244863 - 38244801
Alignment:
Q  326 aaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactat 387  Q
    |||||| ||||| ||||||||||||||| ||||| |||| ||||||||||| |||||||||||    
T  38244863 aaatttaagttagccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 9929781 - 9929724
Alignment:
Q  431 cattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgcaact 488  Q
    ||||||||||||| ||||||||||||||||||| || |||||||  |||| |||||||    
T  9929781 cattatttttccatttagttaaccaaataaattttgaaaaaatatcggtcgcgcaact 9929724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 29167757 - 29167818
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccacta 386  Q
    ||||||||||||||| ||||||||||| | ||||| ||||||||| |||||  |||||||||    
T  29167757 aaaatttcagttaactaaatatatggtttgtgtgaccacattttttagttgcctgaccacta 29167818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 5831695 - 5831633
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccacta 386  Q
    ||||||||| ||||||||||||||||||| ||||| || | ||||| ||||| ||||||||||    
T  5831695 aaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccacta 5831633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 5855267 - 5855201
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactattta 390  Q
    ||||||| ||||||||||||||||||| | ||||| |||||||  | ||||| ||||||||||||||    
T  5855267 aaaatttaagttaaccaaatatatggtatgtgtgaccacatttagttagttgcgtgaccactattta 5855201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 34490351 - 34490289
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccacta 386  Q
    |||||||||||| || ||||||||||||| ||||| |||| ||||| ||||| ||||||||||    
T  34490351 aaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttgcgtgaccacta 34490289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 28499727 - 28499662
Alignment:
Q  288 agacacgttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtc 352  Q
    |||||| |||| ||||||| | |||||||| ||| |  ||||||||||||||||||||||||||||    
T  28499727 agacactttaacgtgtacatcattttgtaccattctaaaaaatttcagttaaccaaatatatggtc 28499662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 2569892 - 2569974
Alignment:
Q  310 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca---tttttcagttgggtgaccactattt 389  Q
    ||||||||||| |  ||| |||| |||||||||||||||||||| |||||  |||   ||||||| ||| |||||||||||||    
T  2569892 tttgtactattctaaaaattttcggttaaccaaatatatggtctgtgtgactacattttttttcaattgcgtgaccactattt 2569974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 25238639 - 25238595
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 369  Q
    |||||||||||||| |||||||||||| | ||||| |||||||||    
T  25238639 aaaatttcagttaatcaaatatatggtttctgtgaccacattttt 25238595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 29168579 - 29168551
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtct 353  Q
    |||||||||||||||||||||||||||||    
T  29168579 aaaatttcagttaaccaaatatatggtct 29168551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 324 - 479
Target Start/End: Complemental strand, 10774 - 10617
Alignment:
Q  324 gaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagct-gaaaatgtggtcacgcaactaaaat 421  Q
    |||||||||| |||||||||||||||||||| ||||  | | ||||| |||||  ||||||||||||| ||  |  ||||||||||||||||||||||||    
T  10774 gaaaatttcaattaaccaaatatatggtctaggtgactatattttttaagttgcatgaccactatttaaaaaataaaaaatgtggtcacgcaactaaaat 10675  T
Q  422 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggt 479  Q
     | ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  10674 acccgtgaccattatttttccacttagttaaccaaataaattctcaaaaaataatggt 10617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 24180 - 24020
Alignment:
Q  325 aaaatttcagttaaccaaatatatg--gtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaa 420  Q
    ||||||||||| |||| ||||||||  ||||||||||  |||||||| ||||||  ||||||||||||||||||| |||| |||||| |||||  |||||    
T  24180 aaaatttcagtgaaccgaatatatgtcgtctatgtgactacattttttcagttgcatgaccactatttagaagctaaaaaatgtggttacgcat-taaaa 24082  T
Q  421 tgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 482  Q
    |||||||||||| |||||||||||||| || |||||||||||| || |||| || |||||||    
T  24081 tgcgcgtgaccactatttttccacttattttaccaaataaattctgaaaaactagtggtcac 24020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 21667 - 21549
Alignment:
Q  295 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaa 393  Q
    ||||||||||||| ||| || | | ||| |||||| |||||||||| |||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||    
T  21667 ttaatgtgtacacgttt-gtgccactttagaaaatctcagttaaccgaatatatggtctgtgtgaccacattttttcagttgcgtgaccactatatagaa 21569  T
Q  394 gctg-aaaatgtggtcacgc 412  Q
    |||| |||||||||||||||    
T  21568 gctgaaaaatgtggtcacgc 21549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 488
Target Start/End: Complemental strand, 21545 - 21511
Alignment:
Q  454 caaataaattatggaaaaataatggtcacgcaact 488  Q
    |||||||||| ||||||||||||||||||||||||    
T  21545 caaataaattctggaaaaataatggtcacgcaact 21511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 21433 - 21529
Alignment:
Q  295 ttaatgtgtaca-ccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactattt 389  Q
    |||||||||||| || ||| ||| |||||  ||||||||||||||||||||||| ||||| ||| | || || |||| ||||| ||||||| |||||    
T  21433 ttaatgtgtacatccatttataccattttaaaaaatttcagttaaccaaatatacggtctgtgtaagcatatattttaagttgcgtgaccattattt 21529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 87035 - 87112
Alignment:
Q  386 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    |||||||| ||||||| |||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||    
T  87035 atttagaaactgaaaaatgtggtcacgcaactaaaatacacgtgaccactatttttctacttagttaaccaaataaat 87112  T

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Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 112158 - 112235
Alignment:
Q  386 atttagaagctgaaaat-gtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    ||||||||||||||||  |||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||    
T  112158 atttagaagctgaaaaacgtggtcacgcaattaaaatgcacgtgaccactatttttccacttagttaactaaataaat 112235  T

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Target: scaffold0291 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 5870 - 5947
Alignment:
Q  386 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 462  Q
    ||||| |||||||||| ||||||  |||||||||||| |||||||||| ||||||| |||||| ||||||||||||||    
T  5870 atttaaaagctgaaaagtgtggtgtcgcaactaaaatacgcgtgaccactatttttgcacttaattaaccaaataaat 5947  T

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Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 24995 - 24932
Alignment:
Q  326 aaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatt 388  Q
    |||||||||||| |||||||||| |||| ||||| ||||| |||||||||| ||||||||||||    
T  24995 aaatttcagttagccaaatatatagtctgtgtgaccacatgttttcagttgtgtgaccactatt 24932  T

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Target: scaffold0213; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 24797 - 24754
Alignment:
Q  325 aaaatttcagttaaccaaatatatggtctatgtgaacacatttt 368  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||    
T  24797 aaaaattcagttagccaaatatatggtctatgtgaccacatttt 24754  T

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