View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12922_low_3 (Length: 430)

Name: NF12922_low_3
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12922_low_3
NF12922_low_3
[»] scaffold0477 (2 HSPs)
scaffold0477 (14-276)||(5125-5388)
scaffold0477 (268-414)||(4733-4879)
[»] chr6 (32 HSPs)
chr6 (185-413)||(4267214-4267443)
chr6 (234-373)||(4256700-4256841)
chr6 (302-413)||(4299788-4299899)
chr6 (332-410)||(4480696-4480774)
chr6 (185-414)||(4622001-4622227)
chr6 (317-413)||(4260202-4260298)
chr6 (335-414)||(4504444-4504523)
chr6 (331-387)||(3171743-3171799)
chr6 (332-414)||(4492958-4493040)
chr6 (335-414)||(4570978-4571057)
chr6 (335-381)||(4490435-4490481)
chr6 (332-414)||(4617025-4617107)
chr6 (332-413)||(4557128-4557209)
chr6 (335-414)||(4592237-4592316)
chr6 (332-382)||(4560509-4560559)
chr6 (332-382)||(4563714-4563764)
chr6 (333-414)||(4392073-4392154)
chr6 (313-414)||(4516305-4516406)
chr6 (345-406)||(4579448-4579509)
chr6 (332-387)||(4505860-4505915)
chr6 (335-414)||(4585642-4585721)
chr6 (331-414)||(4625953-4626036)
chr6 (348-414)||(4568072-4568138)
chr6 (338-382)||(4457644-4457688)
chr6 (332-380)||(4461126-4461174)
chr6 (332-380)||(4515202-4515250)
chr6 (332-380)||(4606972-4607020)
chr6 (332-387)||(4601792-4601847)
chr6 (332-382)||(4574311-4574361)
chr6 (332-414)||(4613765-4613847)
chr6 (335-380)||(4469809-4469854)
chr6 (345-382)||(4598187-4598224)
[»] chr5 (4 HSPs)
chr5 (307-414)||(24102977-24103084)
chr5 (348-412)||(28000148-28000212)
chr5 (185-250)||(24109335-24109400)
chr5 (185-252)||(24102888-24102955)
[»] chr8 (3 HSPs)
chr8 (332-414)||(1674229-1674311)
chr8 (332-381)||(20863923-20863972)
chr8 (332-387)||(16686341-16686396)
[»] scaffold0288 (1 HSPs)
scaffold0288 (330-414)||(3766-3850)
[»] chr7 (1 HSPs)
chr7 (335-414)||(3086426-3086505)
[»] chr3 (1 HSPs)
chr3 (332-406)||(1281117-1281191)


Alignment Details
Target: scaffold0477 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 5388 - 5125
Alignment:
Q  14 gaacaagtgagtaatgttcgtggtaacatgacttcaaaaactgtaggattttgataataaaactcttttgtgacatggttctatctaatatatgatccnn 113  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||      
T  5388 gaacaattgagtaatgttcttggtaacatgacttcaaaaactgtaggattttgataatgaaactcttttgtgacatggttctatctaatatatgatccaa 5289  T
Q  114 nnnnntatatatacaatttcacattgcattagt--tataacttagaaccatagttttcaatcacaccaccaacaaatgacataataaatcacacttatat 211  Q
         ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  5288 caaaatatatatacaatttcacattgcattagttatataacttataaccatagttttcaatcgcaccaccaacaaatgacataacaaatcacacttatat 5189  T
Q  212 ggcttacattttatatatgtttagcacctcacactaaatgcttcgttttttaaccataaaataaa 276  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5188 ggcttaca-tttatatatgtttagcacctcacactaaatgcatcgttttttaaccataaaataaa 5125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 268 - 414
Target Start/End: Complemental strand, 4879 - 4733
Alignment:
Q  268 taaaataaattcaagaggaaatcacagaaccacgtttcatagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaa 367  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4879 taaaataaattcaagaggaaatcacacaaccacgtttcatagaatatataactttaatctagcattgtttaagcatgacctccttaatcactttgtccaa 4780  T
Q  368 gttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||||||||||||||| || |||||||||||||||||||||||    
T  4779 gttcatgtatgaacagccaccagaactggtgttctcctctgccttct 4733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 413
Target Start/End: Complemental strand, 4267443 - 4267214
Alignment:
Q  185 aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaaatgcttcgt--tttttaaccataaaataaattcaag 282  Q
    |||| ||||||||||||| ||| | |||||||  |||||| ||||    ||||||||||||||||||| || |  ||||| || |||||| |||||||||    
T  4267443 aaatcacataataaatcatactaa-atggcttttattttaaatataacaagcacctcacactaaatgcatcatattttttgacaataaaacaaattcaag 4267345  T
Q  283 aggaaatcacagaaccacgtttcatagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaaca 382  Q
    |||| || ||| ||| ||  ||| |||||||||| |||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  4267344 aggagattacacaactacaattcctagaataaatgacttcaatctagtattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaa 4267245  T
Q  383 gccacgaggactggtgttctcctctgccttc 413  Q
     |||| ||| || |||||||| |||||||||    
T  4267244 accaccaggtcttgtgttctcttctgccttc 4267214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 373
Target Start/End: Complemental strand, 4256841 - 4256700
Alignment:
Q  234 agcacctcacactaaatgcttcgt--tttttaaccataaaataaattcaagaggaaatcacagaaccacgtttcatagaataaatcactttagtctagca 331  Q
    ||||||||||||||||||| || |  ||||| || |||||| ||||||||||||| || ||| |||||| ||||||||||||||| ||| || ||||| |    
T  4256841 agcacctcacactaaatgcatcatattttttgacaataaaacaaattcaagaggagattacacaaccacatttcatagaataaattactataatctagta 4256742  T
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcat 373  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  4256741 ttgtttaagcatgacctccttaataactttgtccaagttcat 4256700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 4299899 - 4299788
Alignment:
Q  302 tttcatagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttc 401  Q
    |||| ||||||||||||||||| ||||  ||||||||||||  ||||||||||| |||||||||||||||||||| ||||| ||||  ||| | ||||||    
T  4299899 tttcctagaataaatcactttattctaatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttc 4299800  T
Q  402 tcctctgccttc 413  Q
    ||||||||||||    
T  4299799 tcctctgccttc 4299788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 410
Target Start/End: Original strand, 4480696 - 4480774
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgcc 410  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| || |||| ||||||||||    
T  4480696 ttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgcc 4480774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 414
Target Start/End: Original strand, 4622001 - 4622227
Alignment:
Q  185 aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaa--atgcttcgttttttaaccataaaataaattcaag 282  Q
    |||||||||||||| | ||| |||||||||||| |||||| ||||   |||||||||||||||   ||  ||  |||||| || ||||||||||||||||    
T  4622001 aaatgacataataagttacatttatatggcttagattttaaatataactagcacctcacactatgcatcattatttttttgacaataaaataaattcaag 4622100  T
Q  283 aggaaatcacagaaccacgtttcatagaataaatcactttagtct-agcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaac 381  Q
    || | || ||| |||||| |||| | |       ||||||| | | || ||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  4622101 agaagatgacacaaccacatttcctggc------cactttaattttagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaac 4622194  T
Q  382 agccacgaggactggtgttctcctctgccttct 414  Q
    | |||| ||| |||||  |||| ||||||||||    
T  4622195 aaccaccagggctggtcgtctcatctgccttct 4622227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 4260298 - 4260202
Alignment:
Q  317 cactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttc 413  Q
    ||||||| ||||| ||||||| |||||||||| |||||| |||||||||||||||||  ||||| | |||   ||||||||||||||||||||||||    
T  4260298 cactttaatctagtattgtttgagcatgacctgcttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttc 4260202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 4504523 - 4504444
Alignment:
Q  335 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| |||| | | || |||| ||||||||||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttct 4504444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 3171743 - 3171799
Alignment:
Q  331 attgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccac 387  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  3171743 attgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccac 3171799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 4492958 - 4493040
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgagg-actggtgttctcctctgccttct 414  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||| ||| ||| |||| ||||||||||||||    
T  4492958 ttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtact-gtgtcctcctctgccttct 4493040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 4570978 - 4571057
Alignment:
Q  335 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||| |||| ||| || |||| |||||| |||||||    
T  4570978 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttct 4571057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 4490481 - 4490435
Alignment:
Q  335 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaac 381  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaac 4490435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 4617025 - 4617107
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||||||  || |||||||| ||||||| |||||||||||||||||| ||||  || || |||||||||||||||||||    
T  4617025 ttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttct 4617107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 4557128 - 4557209
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttc 413  Q
    |||||||||||  ||||||||||||||||| ||||| |||||||||||||| |||| ||| || |||| |||||| ||||||    
T  4557128 ttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 4557209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 4592237 - 4592316
Alignment:
Q  335 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    ||||||||  |||||||| |||| ||||||||||||||| |||||||| || | ||| || |||||||||||||||||||    
T  4592237 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttct 4592316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 4560509 - 4560559
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaaca 382  Q
    |||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  4560509 ttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaaca 4560559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 4563714 - 4563764
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaaca 382  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  4563714 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaaca 4563764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 4392154 - 4392073
Alignment:
Q  333 tgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||| | |||| ||| |  |||| ||||| ||||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttct 4392073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 414
Target Start/End: Original strand, 4516305 - 4516406
Alignment:
Q  313 aaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgcctt 412  Q
    ||||||||||| ||||   |||||| ||||  ||||||||||||||||| ||||||||||  |||||||| ||||  || || |||| ||||||||||||    
T  4516305 aaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgcctt 4516404  T
Q  413 ct 414  Q
    ||    
T  4516405 ct 4516406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 4579448 - 4579509
Alignment:
Q  345 acctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctc 406  Q
    ||||||||||||||||| ||||||||||||||||||||||| | ||| || |||| ||||||    
T  4579448 acctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctc 4579509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 4505860 - 4505915
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccac 387  Q
    |||||||||||  ||||||||||| |||||||||||||||||| ||||||| ||||    
T  4505860 ttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccac 4505915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 4585642 - 4585721
Alignment:
Q  335 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    ||||||||  ||||||||||||||||| |||||||| ||||||||||| || | ||| || |||| |||||| |||||||    
T  4585642 tttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttct 4585721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 414
Target Start/End: Original strand, 4625953 - 4626036
Alignment:
Q  331 attgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||||||| ||| || ||||||| ||| ||||  |||||||||||||| ||||  |||||  ||||||||||||||||||    
T  4625953 attgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttct 4626036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 4568072 - 4568138
Alignment:
Q  348 tccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    ||||||||||||||||||||||||||||||||| |  ||| ||| || |||| || |||||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttct 4568138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 4457644 - 4457688
Alignment:
Q  338 aagcatgacctccttaatcactttgtccaagttcatgtatgaaca 382  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||    
T  4457644 aagcatgacttccttagtcactttgtccaagttcaagtatgaaca 4457688  T

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Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 4461126 - 4461174
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaa 380  Q
    ||||||||||| ||| |||||||| ||||||||||||||| ||||||||    
T  4461126 ttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaa 4461174  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 4515250 - 4515202
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaa 380  Q
    |||||||||||  |||||||| ||||||||||||||||||| |||||||    
T  4515250 ttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaa 4515202  T

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Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 4607020 - 4606972
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaa 380  Q
    |||||||||||  |||| |||||||||||| ||||||||||||||||||    
T  4607020 ttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaa 4606972  T

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Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 4601792 - 4601847
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccac 387  Q
    |||||||||||  ||||||||||| |||||||||| |||| |||||||||| ||||    
T  4601792 ttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccac 4601847  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 4574311 - 4574361
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaaca 382  Q
    |||||||||||  ||||||||||||||||| ||||||||  ||||||||||    
T  4574311 ttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaaca 4574361  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 4613847 - 4613765
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||| ||||  ||||| || |||||||||||||||||||| |||||||| || |  || || |||| ||||||||||||||    
T  4613847 ttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttct 4613765  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 4469809 - 4469854
Alignment:
Q  335 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaa 380  Q
    |||||||| ||| |||||||| ||||||||||||||| ||||||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaa 4469854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 4598187 - 4598224
Alignment:
Q  345 acctccttaatcactttgtccaagttcatgtatgaaca 382  Q
    ||||||||||||||||| || |||||||||||||||||    
T  4598187 acctccttaatcactttctctaagttcatgtatgaaca 4598224  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 24102977 - 24103084
Alignment:
Q  307 tagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctc 406  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||  || |||||||| ||    
T  24102977 tagaataaatgactttaatctagaattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttc 24103076  T
Q  407 tgccttct 414  Q
    ||||||||    
T  24103077 tgccttct 24103084  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 28000212 - 28000148
Alignment:
Q  348 tccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgcctt 412  Q
    ||||||||||||||||||||||||||||||||||| ||||  || || |||||||||||||||||    
T  28000212 tccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctt 28000148  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 24109335 - 24109400
Alignment:
Q  185 aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaaat 250  Q
    |||| ||||||||| ||| ||||||||||||||||||||| ||||    |||||||||||||||||    
T  24109335 aaatcacataataagtcatacttatatggcttacattttaaatataaccagcacctcacactaaat 24109400  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 24102888 - 24102955
Alignment:
Q  185 aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaaatgc 252  Q
    |||| ||||||||| ||| |||||||||| |||||||||| |||    ||||||||||||||||||||    
T  24102888 aaatcacataataagtcatacttatatggtttacattttaaatagaactagcacctcacactaaatgc 24102955  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 1674229 - 1674311
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||||| ||||  || || |||||||||||||||||||    
T  1674229 ttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttct 1674311  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 20863972 - 20863923
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaac 381  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  20863972 ttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaac 20863923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 16686396 - 16686341
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccac 387  Q
    |||||||||||  |||||| |||||||||| |||||||||||||||||||| ||||    
T  16686396 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccac 16686341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 414
Target Start/End: Complemental strand, 3850 - 3766
Alignment:
Q  330 cattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||||||||  ||||  || || |||||||||||||||||||    
T  3850 cattgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttct 3766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 3086426 - 3086505
Alignment:
Q  335 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttct 414  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| ||||    |||||||||||| ||||| ||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttct 3086505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 406
Target Start/End: Original strand, 1281117 - 1281191
Alignment:
Q  332 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctc 406  Q
    |||||||||||  |  ||||||||||||||||| ||||||||||||||||| ||||  || || |||||||||||    
T  1281117 ttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctc 1281191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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