View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12922_low_4 (Length: 387)

Name: NF12922_low_4
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12922_low_4
NF12922_low_4
[»] chr5 (1 HSPs)
chr5 (5-192)||(29950848-29951035)
[»] chr2 (6 HSPs)
chr2 (5-192)||(22299314-22299501)
chr2 (5-192)||(24807158-24807345)
chr2 (31-184)||(23732546-23732698)
chr2 (30-70)||(44793706-44793746)
chr2 (334-371)||(24807484-24807521)
chr2 (334-371)||(22299138-22299175)
[»] chr4 (3 HSPs)
chr4 (5-192)||(15018513-15018700)
chr4 (6-184)||(19457233-19457411)
chr4 (61-192)||(19458938-19459068)
[»] chr7 (1 HSPs)
chr7 (5-192)||(40999092-40999279)
[»] chr1 (2 HSPs)
chr1 (5-184)||(20189670-20189849)
chr1 (31-192)||(22063128-22063289)
[»] scaffold1778 (1 HSPs)
scaffold1778 (85-192)||(1263-1370)
[»] chr3 (2 HSPs)
chr3 (143-192)||(16348112-16348161)
chr3 (334-371)||(16347936-16347973)
[»] chr6 (2 HSPs)
chr6 (125-192)||(20417029-20417096)
chr6 (125-192)||(20416048-20416115)
[»] scaffold0146 (1 HSPs)
scaffold0146 (334-371)||(8447-8484)
[»] scaffold0139 (1 HSPs)
scaffold0139 (334-371)||(5282-5319)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 29951035 - 29950848
Alignment:
Q  5 atggacatcatcatcgttccatatttcataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgtta 104  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29951035 atggacatgatcatcgttccaaatctcataattttcttccacttgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgtta 29950936  T
Q  105 gacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    | ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  29950935 ggcaattgaataatattagaagaagaatcccaacatttaaaaacacaaaccaacttagaagaaggtactaatgtaatagtaggccaaa 29950848  T

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Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 22299501 - 22299314
Alignment:
Q  5 atggacatcatcatcgttccatatttcataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgtta 104  Q
    |||||||| |||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22299501 atggacatgatcatcgttccaaatctcataatttccttccacctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgtta 22299402  T
Q  105 gacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22299401 ggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaa 22299314  T

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Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 24807158 - 24807345
Alignment:
Q  5 atggacatcatcatcgttccatatttcataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgtta 104  Q
    |||||||| |||||||||||| || ||||||||| ||||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  24807158 atggacatgatcatcgttccaaatctcataatttccttccacctgttgggaaaaagtttcttcgttctctttgtttccttcatgacataaagaaatgtta 24807257  T
Q  105 gacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24807258 ggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaa 24807345  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 23732546 - 23732698
Alignment:
Q  31 cataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgttagacaattgaataatatttgaagaaga 130  Q
    |||||||| ||||||||||||| |||    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  23732546 cataatttccttccacttgttgggaatttttttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaaga 23732645  T
Q  131 atcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt 184  Q
    ||||||||| |||||||||| || ||| ||||||||||||||||||||||||||    
T  23732646 atcccaacacttgaaaacactaa-caacttagaagaaggtactaatgtaatagt 23732698  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 44793706 - 44793746
Alignment:
Q  30 tcataattttcttccacttgttgagaaaaagtttcttcatt 70  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44793706 tcataattttcttccacttgttgagaaaaaatttcttcatt 44793746  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 24807484 - 24807521
Alignment:
Q  334 gactctctttttcaaggagattttcctttagtatttta 371  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24807484 gactctctttttcaaggagattttcctctagtatttta 24807521  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 22299175 - 22299138
Alignment:
Q  334 gactctctttttcaaggagattttcctttagtatttta 371  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  22299175 gactctctttttcaaggagattttcttctagtatttta 22299138  T

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Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 15018513 - 15018700
Alignment:
Q  5 atggacatcatcatcgttccatatttcataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgtta 104  Q
    |||||||| |||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15018513 atggacatgatcatcgttccaaatcacataattttcttccacctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgtta 15018612  T
Q  105 gacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    | ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  15018613 ggcaattgaataatattagaagaagaatcccaacatttaaaaacacaaaccaacttagaagaaggtactagtgtaatagtaggccaaa 15018700  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 19457411 - 19457233
Alignment:
Q  6 tggacatcatcatcgttccatatttcataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgttag 105  Q
    ||||||| |||||| ||||| |   |||||||||||||||||||||||||||   |||||||||||| |||||||||||| |||||||||||||||||||    
T  19457411 tggacattatcatctttccaaaacacataattttcttccacttgttgagaaattttttcttcattctctttgtttccttcgtgacataaagaaatgttag 19457312  T
Q  106 acaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt 184  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  19457311 gcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagt 19457233  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 19459068 - 19458938
Alignment:
Q  61 tttcttcattctattt-gtttccttcatgacataaagaaatgttagacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatt 159  Q
    |||||||||||| ||| ||||||||||| |||||||||||| |  | ||||||||||||||   ||||| |||||||||||||||||||||||||||| |    
T  19459068 tttcttcattctcttttgtttccttcattacataaagaaattt--ggcaattgaataatataaaaagaaaaatcccaacatttgaaaacacaaaccaact 19458971  T
Q  160 tagaagaaggtactaatgtaatagttggccaaa 192  Q
    |||||||| ||||||||| |||||| |||||||    
T  19458970 tagaagaatgtactaatgcaatagtaggccaaa 19458938  T

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Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 40999092 - 40999279
Alignment:
Q  5 atggacatcatcatcgttccatatttcataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgtta 104  Q
    |||||||| |||||||||| | |||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  40999092 atggacatgatcatcgttctaaatttcataatttccttccacctgttgagaaaaagtttcttcgttctctttgtttccttcataacataaagaaatgtta 40999191  T
Q  105 gacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
      ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  40999192 agcaattgaataatattagaagaagaatcccaaaatttgaaaacacaaaccaatttagaagaagctactaatgtcatagtaggccaaa 40999279  T

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Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 20189670 - 20189849
Alignment:
Q  5 atggacatcatcatcgttccatatttcataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgtta 104  Q
    |||||||| |||||||||||| || ||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||    
T  20189670 atggacatgatcatcgttccaaatctcataatttccttccacctgttgagaaaaagtttattcattctctttgtttccttcacgacataaagaaatgtta 20189769  T
Q  105 gacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt 184  Q
    | ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  20189770 ggcaattgaataatattagaagaacaatcccaacatttgaaaacacaaaccaacttagaagaatgtactaatgtaatagt 20189849  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 22063128 - 22063289
Alignment:
Q  31 cataattttcttccacttgttgagaaaaagtttcttcattctatttgtttccttcatgacataaagaaatgttagacaattgaataatatttgaagaaga 130  Q
    |||||||| |||| |||||||| ||||   |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  22063128 cataatttccttcaacttgttgggaaattttttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaaga 22063227  T
Q  131 atcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  22063228 atcccaacatctgaaaacacaaaccaacttagaagaaggtactaatgtaatagtaggccaaa 22063289  T

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Target: scaffold1778 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 1370 - 1263
Alignment:
Q  85 catgacataaagaaatgttagacaattgaataatatttgaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt 184  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1370 catgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt 1271  T
Q  185 tggccaaa 192  Q
     |||||||    
T  1270 aggccaaa 1263  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 16348161 - 16348112
Alignment:
Q  143 gaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16348161 gaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaa 16348112  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 16347973 - 16347936
Alignment:
Q  334 gactctctttttcaaggagattttcctttagtatttta 371  Q
    ||||||||||||||||||||||||||| || |||||||    
T  16347973 gactctctttttcaaggagattttcctctaatatttta 16347936  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 20417096 - 20417029
Alignment:
Q  125 agaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    |||||||||||||||||| |  ||||| ||||| || || |||||||||||||||||||| |||||||    
T  20417096 agaagaatcccaacatttaactacacataccaactttgatgaaggtactaatgtaatagtaggccaaa 20417029  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 20416048 - 20416115
Alignment:
Q  125 agaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagttggccaaa 192  Q
    |||||||||||||||||| |  ||||| ||||| || || ||||||| |||||||||||| |||||||    
T  20416048 agaagaatcccaacatttaactacacataccaactttgatgaaggtattaatgtaatagtaggccaaa 20416115  T

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Target: scaffold0146 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 8484 - 8447
Alignment:
Q  334 gactctctttttcaaggagattttcctttagtatttta 371  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  8484 gactctctttttcaaggagattttcctctagtatttta 8447  T

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Target: scaffold0139 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 5319 - 5282
Alignment:
Q  334 gactctctttttcaaggagattttcctttagtatttta 371  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  5319 gactctctttttcaaggagatttccctctagtatttta 5282  T

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