View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12922_low_6 (Length: 380)
Name: NF12922_low_6
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12922_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 11890209 - 11889876
Alignment:
| Q |
20 |
tagtcttcaaagaacagtacttgcagatttctacctctctgccttcaaaaagagcttctctgtatggttttggagagcatacaaagagttctttcaagtt |
119 |
Q |
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| T |
11890209 |
tagtcttcaaagaacagtacttgcagatttctacctctctgccttcaaaaagagcttctctgtatggttttggagagcatacaaagagttctttcaagtt |
11890110 |
T |
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| Q |
120 |
gaaaccaaaccaaactttcactctttggaatgaagatattggtagttctaatgttgatgtgaatctttatggctctcatccattttatttggatgtgaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890109 |
gaaaccaaaccaaactttcactctttggaatgaagatattggtagttctaatgttgatgtgaatctttatggctctcatccattttatttggatgtgaga |
11890010 |
T |
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| Q |
220 |
aagggttcatctgatggaagagtgaaaagtgggaccacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtctta |
319 |
Q |
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| T |
11890009 |
aagggttcatctgatggaagagtgaaaagtgggactacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtctta |
11889910 |
T |
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| Q |
320 |
cttataaggtgattggcggtgtttttgatttgta |
353 |
Q |
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| T |
11889909 |
cttataaggtgattggtggtgtttttgatttgta |
11889876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 11902553 - 11902220
Alignment:
| Q |
20 |
tagtcttcaaagaacagtacttgcagatttctacctctctgccttcaaaaagagcttctctgtatggttttggagagcatacaaagagttctttcaagtt |
119 |
Q |
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| T |
11902553 |
tagtcttcaaagaacagtacttgcagatttctacctctctgccttcaaaaagagcttctctgtatggttttggagagcatacaaagagttctttcaagtt |
11902454 |
T |
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| Q |
120 |
gaaaccaaaccaaactttcactctttggaatgaagatattggtagttctaatgttgatgtgaatctttatggctctcatccattttatttggatgtgaga |
219 |
Q |
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| T |
11902453 |
gaaaccaaaccaaactttcactctttggaatgaagatattggtagttctaatgttgatgtgaatctttatggctctcatccattttatttggatgtgaga |
11902354 |
T |
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| Q |
220 |
aagggttcatctgatggaagagtgaaaagtgggaccacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtctta |
319 |
Q |
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| T |
11902353 |
aagggttcatctgatggaagagtgaaaagtgggactacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtctta |
11902254 |
T |
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| Q |
320 |
cttataaggtgattggcggtgtttttgatttgta |
353 |
Q |
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| T |
11902253 |
cttataaggtgattggtggtgtttttgatttgta |
11902220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 11896642 - 11896554
Alignment:
| Q |
265 |
gttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggcggtgtttttgatttgta |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11896642 |
gttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggtggtgtttttgatttgta |
11896554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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