View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12922_low_7 (Length: 335)

Name: NF12922_low_7
Description: NF12922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12922_low_7
NF12922_low_7
[»] chr5 (1 HSPs)
chr5 (41-313)||(22486627-22486896)
[»] chr1 (2 HSPs)
chr1 (41-266)||(29100809-29101035)
chr1 (68-174)||(24530991-24531097)
[»] chr7 (1 HSPs)
chr7 (65-174)||(49011514-49011623)
[»] chr4 (4 HSPs)
chr4 (1-41)||(46551216-46551256)
chr4 (210-266)||(54089278-54089334)
chr4 (113-172)||(54475409-54475468)
chr4 (89-133)||(28323816-28323860)
[»] chr3 (1 HSPs)
chr3 (212-262)||(36834068-36834118)
[»] chr2 (1 HSPs)
chr2 (116-172)||(14651675-14651731)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 41 - 313
Target Start/End: Complemental strand, 22486896 - 22486627
Alignment:
Q  41 actgaacatgcttccagttttcacgtgtatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaaggg 140  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  22486896 actgaacatgcttcaagtttccacgtctatgctgtgttaattcaagacatcaaagacattttgtccactacaaatttctccattcatcattgtttaaggg 22486797  T
Q  141 aagggaatcagtgtgcggacttcatggcaaagctgggcgctacctcaaacacagaataccttcatcatgccactcctccacatgacttactacctttgat 240  Q
    ||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  22486796 aagggaaccaatgtgcggacttcatggctaagctgggcgctacctcaaacactgaataccatcatcatgccactcctccacatgccttacttcctttgat 22486697  T
Q  241 caggatcgacgcaatgggaactttgtaccatagggtctaagtcctatacttttctttaatttttgttgttttt 313  Q
     |||| ||||||| ||||||||||||| | ||| |||||||||||||| |||||||   ||||||||||||||    
T  22486696 taggaccgacgcagtgggaactttgtatcctagagtctaagtcctatatttttctt---tttttgttgttttt 22486627  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 266
Target Start/End: Original strand, 29100809 - 29101035
Alignment:
Q  41 actgaacatgcttccagttttcacgtgtatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaaggg 140  Q
    |||||||||| |||||  | ||| |||||| |||| |||||||||||||||||||||||| |  |||||||  || |||| |||||||||||||| || |    
T  29100809 actgaacatgtttccaactatcatgtgtatactgttttaattcaagacatcaaagacattctagccactacagatctctcaattcaacattgttttagag 29100908  T
Q  141 aagggaatcagtgtgcggacttcatggcaaagctgggcgctacctcaaacacagaataccttcatcatgccactcctccacatgacttactacc-tttga 239  Q
    |||||||||| ||||| ||||||||||| ||||| || || | ||| ||  || | ||| ||  |||  |||||||||  |||||| | || || |||||    
T  29100909 aagggaatcaatgtgctgacttcatggcgaagctaggagcaaactctaatgcaaattacttttctcacaccactcctcgtcatgaccttctcccttttga 29101008  T
Q  240 tcaggatcgacgcaatgggaactttgt 266  Q
    ||||||||||||| |||||||| ||||    
T  29101009 tcaggatcgacgccatgggaaccttgt 29101035  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 24530991 - 24531097
Alignment:
Q  68 tatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaagggaagggaatcagtgtgcggacttcatgg 167  Q
    |||||||| ||||| ||||| |||||||||||||| || || || || ||||||||||| |||||||| || |||||||| || ||||| ||| ||||||    
T  24530991 tatgctgttttaatccaagatatcaaagacattttatcgacaacaaacttctccattcatcattgttttagagaagggaaccaatgtgctgacctcatgg 24531090  T
Q  168 caaagct 174  Q
    |||||||    
T  24531091 caaagct 24531097  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 49011623 - 49011514
Alignment:
Q  65 gtgtatgctgtgttaattcaagacatcaaagacattttgtccactacgaatttctccattcaacattgtttaagggaagggaatcagtgtgcggacttca 164  Q
    |||||||| || |||||||||||||||||||||||| |  |||||||  ||||||| |||||||||||||| || ||||||||||| || || |||||||    
T  49011623 gtgtatgccgtattaattcaagacatcaaagacattctagccactacagatttctcaattcaacattgttttagagaagggaatcaatgcgctgacttca 49011524  T
Q  165 tggcaaagct 174  Q
    |||| |||||    
T  49011523 tggcgaagct 49011514  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46551216 - 46551256
Alignment:
Q  1 ctaaactgctcaatcacctaaattccatatttggtggaaaa 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  46551216 ctaaactgctcaatcacctaaattccagatttggtggaaaa 46551256  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 54089334 - 54089278
Alignment:
Q  210 ccactcctccacatgacttactacctttgatcaggatcgacgcaatgggaactttgt 266  Q
    |||||||||| |||||| | || |||||||||||||||||||| |||||||| ||||    
T  54089334 ccactcctcctcatgaccttctccctttgatcaggatcgacgccatgggaaccttgt 54089278  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 54475468 - 54475409
Alignment:
Q  113 aatttctccattcaacattgtttaagggaagggaatcagtgtgcggacttcatggcaaag 172  Q
    |||||||||||||| |||||| | || ||||||||||| ||||| |||||| ||||||||    
T  54475468 aatttctccattcatcattgtcttagagaagggaatcaatgtgccgacttcctggcaaag 54475409  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 28323816 - 28323860
Alignment:
Q  89 atcaaagacattttgtccactacgaatttctccattcaacattgt 133  Q
    |||||||||||||||| |||| | |||||||||||||| ||||||    
T  28323816 atcaaagacattttgtacacttcaaatttctccattcatcattgt 28323860  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 36834118 - 36834068
Alignment:
Q  212 actcctccacatgacttactacctttgatcaggatcgacgcaatgggaact 262  Q
    |||||||||  |||| | || ||||||||||||||||||||||||||||||    
T  36834118 actcctccaagtgacctccttcctttgatcaggatcgacgcaatgggaact 36834068  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 14651731 - 14651675
Alignment:
Q  116 ttctccattcaacattgtttaagggaagggaatcagtgtgcggacttcatggcaaag 172  Q
    |||||||| ||||||||| | || ||||| ||||| |||||||| ||||||||||||    
T  14651731 ttctccatacaacattgtcttagagaaggaaatcaatgtgcggatttcatggcaaag 14651675  T

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