View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12923_high_1 (Length: 461)

Name: NF12923_high_1
Description: NF12923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12923_high_1
NF12923_high_1
[»] chr4 (2 HSPs)
chr4 (1-256)||(734484-734739)
chr4 (328-360)||(734807-734839)
[»] chr3 (3 HSPs)
chr3 (1-256)||(45390876-45391131)
chr3 (1-239)||(45386507-45386745)
chr3 (328-360)||(45391199-45391231)
[»] chr8 (2 HSPs)
chr8 (20-164)||(40577944-40578088)
chr8 (153-223)||(40578165-40578235)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 734484 - 734739
Alignment:
Q  1 ttttcctcctcaggaggaattgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttct 100  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  734484 ttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttct 734583  T
Q  101 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734584 ctcctttcacaaccaccgtatgagacttgcaatcagctatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 734683  T
Q  201 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734684 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 734739  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 734807 - 734839
Alignment:
Q  328 ctaaacaaaataaaattgctcagaatcagcgcc 360  Q
    |||||||||||||||||||||||||||||||||    
T  734807 ctaaacaaaataaaattgctcagaatcagcgcc 734839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 45390876 - 45391131
Alignment:
Q  1 ttttcctcctcaggaggaattgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttct 100  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45390876 ttttcctcctcaggagcaattgggatcggagaaagaagctcaacctttctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttct 45390975  T
Q  101 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45390976 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 45391075  T
Q  201 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391076 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 45391131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45386507 - 45386745
Alignment:
Q  1 ttttcctcctcaggaggaattgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttct 100  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45386507 ttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctctgctttct 45386606  T
Q  101 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 200  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  45386607 ctcctttcacaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttc 45386706  T
Q  201 acaatgcatgaaaactttcagcaaaatctctgccggagg 239  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  45386707 acaatgcatgaaaactctcagcaaaatctctgctggagg 45386745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 45391199 - 45391231
Alignment:
Q  328 ctaaacaaaataaaattgctcagaatcagcgcc 360  Q
    |||||||||||||||||||||||||||||||||    
T  45391199 ctaaacaaaataaaattgctcagaatcagcgcc 45391231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 40577944 - 40578088
Alignment:
Q  20 ttgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttctctcctttcacaaccaccgt 119  Q
    ||||||||||||  ||||||||||| |  || ||||||||| ||||||| || || | |||||||||||| |||||||| |||||||| ||||  ||| |    
T  40577944 ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatccgctttttctcctttaacaataacctt 40578043  T
Q  120 atgagacttgcaatcagttatcacttcttcaacacctggaaaatc 164  Q
     ||||| ||||||||||| | ||| |||||||| |||| ||||||    
T  40578044 gtgagatttgcaatcagtaaccacatcttcaacccctgaaaaatc 40578088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 40578165 - 40578235
Alignment:
Q  153 acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagca 223  Q
    |||||||||| |||| |  || ||||||||||| |||||||| | ||||||||||||||| ||||| ||||    
T  40578165 acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagca 40578235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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