View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12923_high_2 (Length: 376)
Name: NF12923_high_2
Description: NF12923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12923_high_2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 127 - 376
Target Start/End: Complemental strand, 33432323 - 33432074
Alignment:
| Q |
127 |
tagagtagtttgatttgagcaaaagaagagagaatttaagaagcttacattgataaaattagatggatgagggttgtgtagaggaggatgaaaaccataa |
226 |
Q |
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| T |
33432323 |
tagagtggtttgatttgagcaaaagaagagagaatttaagaagcttacattgataaaattagatggatgaggattgtgtagaggaggatgaaaaccataa |
33432224 |
T |
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| Q |
227 |
cccatttcaccatgtaatctaattttttccaattgagcaacacctaatcctctttgtggttgctttggtttatcttgattgtttttcttcccttttcttg |
326 |
Q |
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| T |
33432223 |
cccatttcaccatgtaatctaattttttccaattgagcaacacctaatcctctttgtggttgctttggtttatcttgatggtttttcttcccttttcttg |
33432124 |
T |
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| Q |
327 |
atgaagatccacttactctttcatttcccatgtttgaatctccaaaataa |
376 |
Q |
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| T |
33432123 |
atgaagatccacttactctttcatttcccatgtttgaatctccaaaataa |
33432074 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 33432434 - 33432355
Alignment:
| Q |
16 |
acaaattaattaaaatagatgaaattaattaattccactaattaatccaagtaaaacattattttttataatcaaaatac |
95 |
Q |
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| T |
33432434 |
acaaattaattaaaatagatgaaattaattaattccactaattaatccaagtaaaacattattttttataatcaaaatac |
33432355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 43337233 - 43337139
Alignment:
| Q |
238 |
atgtaatctaattttttccaattgagcaacacctaatcctctttgtggttgctttggtttatcttgattgtttttcttcccttttcttgatgaag |
332 |
Q |
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| T |
43337233 |
atgtaatctgattttctccaactgagcaacaccaagtcctctttgaggttgctttggcttatctgaattactcttcttcccttttcttgatgaag |
43337139 |
T |
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