View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12923_high_3 (Length: 342)
Name: NF12923_high_3
Description: NF12923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12923_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 27 - 310
Target Start/End: Original strand, 2354668 - 2354951
Alignment:
| Q |
27 |
ggatggactatgtcacgactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttaatattttttctctcattc |
126 |
Q |
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| T |
2354668 |
ggatggactatgtcacaactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttcatattttttctctcattc |
2354767 |
T |
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| Q |
127 |
agcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatatggttttcgattttaatcatgttc |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2354768 |
agcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatattgttttcgattttaatcatgttc |
2354867 |
T |
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| Q |
227 |
tctctcttcctctctcatcaattctgaaaccacgctacacacattttagctacaatgtaatatgatgtacaactcacacacaca |
310 |
Q |
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||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
2354868 |
tctctcttcctctctcatcaattttgaaaccatactacacatattttaactacaatgtaatatgatgtacaactcagacacaca |
2354951 |
T |
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