View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12924_high_1 (Length: 736)
Name: NF12924_high_1
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 10 - 718
Target Start/End: Complemental strand, 31010103 - 31009395
Alignment:
| Q |
10 |
catcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgaaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010103 |
catcatcaaaggaaaggtgaaaaagagattgacacaaagacctaattgtaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttga |
31010004 |
T |
|
| Q |
110 |
gttgcttcaccaaaagcaaagtaacctaaagtagcaaaacctccatacaacagaaaaattagaaacattcccaaacccaaaactccaccaaatttatctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31010003 |
gttgcttcaccaaaagcaaagtaacctaaagtagcaaaacctccatacaatagaaaaattaggaacattcccaaacccaaaactccaccaaatttatctt |
31009904 |
T |
|
| Q |
210 |
tatcttttgcttctgattccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccatatnnnnnnncagataaaccaccaaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31009903 |
tatcttttgcttctgattccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccatatagaaaaacagataaaccaccaaa |
31009804 |
T |
|
| Q |
310 |
agtcttcaaaggtggcctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009803 |
agtcttcaaaggtggcctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaa |
31009704 |
T |
|
| Q |
410 |
ggagccaaatgtgtcaaacttggaattgcattcaaacccaattgaaaagggaaacaagcccaaatnnnnnnnncctttggtgaaaaacccaataaagatg |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31009703 |
ggagccaaatgtgtcaaacttggaattgcattcaaacccaattgaaaagggaaacaagcccaaataaaaaaaacctttggtgaaaaacccaataaagatg |
31009604 |
T |
|
| Q |
510 |
atgagtttgtattatgactaagatgtatcaaagtagtggaaataaaaataaggtagctaacacaaaaaccacattgcataagaaaaaccataatatcaac |
609 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31009603 |
atgagtttgtattgtgactaagatgtatcaaagtagtggaaataaaaataaggtagctaacacaaaaaccacattgcataagaaaaaccatgatatcaac |
31009504 |
T |
|
| Q |
610 |
gcacaatcttccaaaatggccacttgttgcatagcctaaatcaccaaaagaatttattttggggaaccctacgacagattcaagcctacgacgagtgtat |
709 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31009503 |
gcacaatcttccaaaatggccacttgttgcatagcctaaatcaccaaaagaatttattttggggaaccctacgacggattcaagcctacgacgagtgtat |
31009404 |
T |
|
| Q |
710 |
ataaggagc |
718 |
Q |
| |
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||||||||| |
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|
| T |
31009403 |
ataaggagc |
31009395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 473
Target Start/End: Original strand, 9782794 - 9783041
Alignment:
| Q |
226 |
ttccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccatatnnnnnnncagataaaccaccaaaagtcttcaaaggtggc |
325 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||||||| ||||| | |||||| || ||||| ||||| | |||| ||| |
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| T |
9782794 |
ttccaaaggcaaaaccattccaatcccttcaaaagcataaacagctacaccaataccatagaaaaaaacaccaaaacccttaaaagcttccaaatttggt |
9782893 |
T |
|
| Q |
326 |
ctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtca |
425 |
Q |
| |
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||||||| || || ||||||||||| |||||||| ||||| | | |||| || |||||||||||||||||| ||||||||||| || ||||| |||| |
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| T |
9782894 |
ctattttgcatgaaaacaaaaacatcttcaaccataacaacactcttagcagaaatatcaacaacatcagcaaaaatactcaaaggggctaaatgggtca |
9782993 |
T |
|
| Q |
426 |
aacttggaattgcattcaaacccaattgaaaagggaaacaagcccaaa |
473 |
Q |
| |
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|| || || | |||||| || |||||||| || |||||| |||||| |
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|
| T |
9782994 |
aagttttgatcgaattcaaccctaattgaaatggaaaacaaccccaaa |
9783041 |
T |
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