View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12924_high_17 (Length: 337)

Name: NF12924_high_17
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12924_high_17
NF12924_high_17
[»] chr4 (4 HSPs)
chr4 (18-337)||(23869737-23870056)
chr4 (195-256)||(23452268-23452329)
chr4 (263-337)||(29118406-29118480)
chr4 (264-311)||(32554597-32554644)
[»] chr8 (4 HSPs)
chr8 (264-337)||(4350791-4350864)
chr8 (264-336)||(22930257-22930329)
chr8 (264-337)||(34141960-34142033)
chr8 (264-337)||(22486715-22486787)
[»] chr1 (8 HSPs)
chr1 (263-336)||(23898016-23898089)
chr1 (264-335)||(23935124-23935195)
chr1 (267-337)||(1240366-1240436)
chr1 (265-337)||(10976236-10976308)
chr1 (264-332)||(23970514-23970581)
chr1 (267-337)||(22667699-22667769)
chr1 (265-334)||(34299078-34299147)
chr1 (280-337)||(35405276-35405332)
[»] chr7 (7 HSPs)
chr7 (264-337)||(15134571-15134644)
chr7 (264-337)||(30095880-30095953)
chr7 (264-337)||(21828097-21828170)
chr7 (273-337)||(3350988-3351052)
chr7 (274-337)||(35812560-35812623)
chr7 (264-321)||(26912291-26912348)
chr7 (289-337)||(21292850-21292898)
[»] chr5 (1 HSPs)
chr5 (264-337)||(3193642-3193715)
[»] chr2 (3 HSPs)
chr2 (266-337)||(16647954-16648025)
chr2 (264-337)||(37911368-37911441)
chr2 (267-337)||(4206682-4206751)
[»] chr3 (2 HSPs)
chr3 (263-337)||(11383527-11383600)
chr3 (264-311)||(15670854-15670901)
[»] chr6 (3 HSPs)
chr6 (263-337)||(35122071-35122145)
chr6 (276-337)||(10668998-10669059)
chr6 (276-337)||(13229255-13229316)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 23869737 - 23870056
Alignment:
Q  18 tttgcttggcgcatgatcttaaaaagagttaaacccaaaactaatttagattgtgtcgatcacctatttttgaatttctgctaaaattagttgggagtta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23869737 tttgcttggcgcatgatcttaaaaagagttaaacccaaaactaatttagattgtgtcgatcacctacttttgaatttctgctaaaattagttgggagtta 23869836  T
Q  118 gcattgtgttttcgaaagagggcaggagtcatttaagttctttctcaggtatagtgcagtcactcctcactccccagtctcctaaaatggctctgctcac 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23869837 gcatagtgttttcgaaagagggcaggagtcatttaagttctttctcaggtatagtgcagtcactcctcactccccagtctcctaaaatggctctgctcac 23869936  T
Q  218 cgacgacccacaaaccaaacaacagctccaagagcacatggtcatgcaggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgctttt 317  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  23869937 cgacgacccacaaacaaaacaacagctccaagaacaaatggtcatgcaggggtggccctgagggcgggctcgaggggcgacagcccagggcaccactttt 23870036  T
Q  318 ttaggggcaccaaaattatt 337  Q
    ||||||||||||||||||||    
T  23870037 ttaggggcaccaaaattatt 23870056  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 23452329 - 23452268
Alignment:
Q  195 tctcctaaaatggctctgctcaccgacgacccacaaaccaaacaacagctccaagagcacat 256  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  23452329 tctcctaaaatgtctctgctcaccgacgacccacaaaccaaacaacggctccaagatcacat 23452268  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 29118406 - 29118480
Alignment:
Q  263 gcaggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||||||||||||||||||||||| |  ||  |||||||||  |||| | |||||||||||||||||    
T  29118406 gcaggggtggccctgagggcgggctcgaggggtgggagctcagggcaccatttttattggggcaccaaaattatt 29118480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 32554644 - 32554597
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcacc 311  Q
    |||||||||||||||||| ||||| ||||||||| || ||||||||||    
T  32554644 caggggtggccctgagggtgggcttgaggggcgatagcccagggcacc 32554597  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 4350864 - 4350791
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||||||||||||||||| |||||||||  || || ||||||| ||||||||| |||||||||||||||    
T  4350864 caggggtggccctgagggcgggcacgaggggcggtagccctgggcaccacttttttagaggcaccaaaattatt 4350791  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 22930257 - 22930329
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattat 336  Q
    ||||||| | ||||||||||||| | ||||||||||||||||||||||  ||||| |||||||||||||||||    
T  22930257 caggggttgtcctgagggcgggcgcaaggggcgacagtccagggcaccattttttcaggggcaccaaaattat 22930329  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 34141960 - 34142033
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||||||||||||| ||| ||||| ||| ||| |||||||||| |||| ||||||||||||||| ||||    
T  34141960 caggggtggccctgagggcaggcgcgaggagcggcagcccagggcaccactttgttaggggcaccaaaactatt 34142033  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 22486787 - 22486715
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||||||||||||| ||  ||||||||| ||| |||||||| |  ||||||| ||| ||||||||||||    
T  22486787 caggggtggccctgagggcaggtgcgaggggcggcagcccagggcatcattttttta-gggtaccaaaattatt 22486715  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 336
Target Start/End: Complemental strand, 23898089 - 23898016
Alignment:
Q  263 gcaggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattat 336  Q
    ||||||||||||||||||| ||||| |||||||| ||| |||||| |||  |||||||||||||||||||||||    
T  23898089 gcaggggtggccctgagggtgggcttgaggggcggcagcccagggaaccatttttttaggggcaccaaaattat 23898016  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 23935124 - 23935195
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaatta 335  Q
    ||||||||||||||| || ||||| |||||||| ||| ||||||||||  |||||||||| |||||||||||    
T  23935124 caggggtggccctgaaggtgggcttgaggggcggcagcccagggcaccatttttttagggtcaccaaaatta 23935195  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 1240366 - 1240436
Alignment:
Q  267 gggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||||||||||||| | |||||||| ||| ||||| ||||  |||||||||||||| |||||||||    
T  1240366 gggtggccctgagggcgggatggaggggcggcagcccaggacaccatttttttaggggcactaaaattatt 1240436  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 10976308 - 10976236
Alignment:
Q  265 aggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||| |||||||||||| ||||  | |||||| ||||||| ||||||  ||||||||||||| ||||||||||    
T  10976308 agggatggccctgagggtgggcgggcggggcggcagtccaaggcaccatttttttaggggcatcaaaattatt 10976236  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 23970514 - 23970581
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaa 332  Q
    |||||| |||||||||  |||||||| |||||||||| |||||||||| |  |||||||||||||||||    
T  23970514 caggggcggccctgagcacgggctcg-ggggcgacagcccagggcaccacaattttaggggcaccaaaa 23970581  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 22667769 - 22667699
Alignment:
Q  267 gggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||| ||||||||||| | |||||||| ||| | ||||||||  || ||||||||||| |||||||||    
T  22667769 gggtggctctgagggcgggtttgaggggcggcagcctagggcaccatttatttaggggcacaaaaattatt 22667699  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 34299147 - 34299078
Alignment:
Q  265 aggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaatt 334  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||| ||||  | ||||| |||||| ||||||    
T  34299147 aggggtgaccctgagggtgggctcgaggggcggcagcccaggacaccattcttttaagggcactaaaatt 34299078  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 35405276 - 35405332
Alignment:
Q  280 ggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||| | |||||||| ||| ||||||||||  ||||||||||||||||||||||||    
T  35405276 ggcgggtttgaggggcggcagcccagggcacca-ttttttaggggcaccaaaattatt 35405332  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 15134644 - 15134571
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||||||||||||||||||  ||||||| ||| |||||||| |   |||||||||||||||||||||||    
T  15134644 caggggtggccctgagggcgggcttaaggggcggcagcccagggcatcaaatttttaggggcaccaaaattatt 15134571  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 30095953 - 30095880
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||| |||| ||| ||||  ||||||| ||| ||||||||||  ||||||||||||||||||||||||    
T  30095953 caggggtggcactgaaggcaggcttaaggggcggcagcccagggcaccatttttttaggggcaccaaaattatt 30095880  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 21828097 - 21828170
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||||||||| |||| ||||||||  ||| ||||||||||  || ||||||||||  |||||||||    
T  21828097 caggggtggccctgagggagggcgcgaggggctgcagcccagggcaccatttctttaggggcataaaaattatt 21828170  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 3350988 - 3351052
Alignment:
Q  273 ccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||||| ||| |||||||||||| ||||| ||    ||||||||||||||||||||||||    
T  3350988 ccctgagggcgagcttgaggggcgacagcccaggacaatatttttttaggggcaccaaaattatt 3351052  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 35812560 - 35812623
Alignment:
Q  274 cctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||| | |||||||| | || |||||||||  ||||||||||||| ||||||||||    
T  35812560 cctgagggcgggtttgaggggcggcggttcagggcaccatttttttaggggcatcaaaattatt 35812623  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 26912291 - 26912348
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttag 321  Q
    ||||||||||||||||||||| | ||||||| | ||| |||||||||| |||| ||||    
T  26912291 caggggtggccctgagggcggacgcgaggggtggcagcccagggcaccactttgttag 26912348  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 21292898 - 21292850
Alignment:
Q  289 gaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||   ||||||||||  |||||||||||||||||||||||    
T  21292898 gaggggcgacaactcagggcaccgtctttttaggggcaccaaaattatt 21292850  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 3193715 - 3193642
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||  |||  || ||||||||||||||||    
T  3193715 caggggtggccctgagggcgggctcgaggggcgggagcccagggcaccattttcataagggcaccaaaattatt 3193642  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 337
Target Start/End: Complemental strand, 16648025 - 16647954
Alignment:
Q  266 ggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||| ||||||||||| ||||||||| ||  ||||||||||  ||||||||||||| ||||||||||    
T  16648025 ggggtggccgtgagggcgggcacgaggggcggcaacccagggcaccatttttttaggggcatcaaaattatt 16647954  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 37911368 - 37911441
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||||||| |||| || |||||||| ||| ||||| ||||  || |||||||||||||||||||||    
T  37911368 caggggtggccctgagcgcggccttgaggggcggcagcccaggacaccatttatttaggggcaccaaaattatt 37911441  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 4206751 - 4206682
Alignment:
Q  267 gggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    ||||||||| |||||| |||| || ||||||||| ||||  ||||  ||||||||||||||||||||||||    
T  4206751 gggtggcccagagggcaggcttgaagggcgacagcccagaacacca-ttttttaggggcaccaaaattatt 4206682  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 11383527 - 11383600
Alignment:
Q  263 gcaggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||||||||||  |||| ||||||||  | ||||||||||| |||||||| ||||||||||||||||    
T  11383527 gcaggggtggccctgagggaaggcttgaggggcggaattccagggcaccactttttta-gggcaccaaaattatt 11383600  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 15670854 - 15670901
Alignment:
Q  264 caggggtggccctgagggcgggctcgaggggcgacagtccagggcacc 311  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||||    
T  15670854 caggggtggccctgagggcgggcgggaggggtggcagtccagggcacc 15670901  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 35122145 - 35122071
Alignment:
Q  263 gcaggggtggccctgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||| |||||||||||||||| |||||||| |||  || ||||||  ||  ||||||||||||||||||||    
T  35122145 gcaggggtagccctgagggcgggcttgaggggcggcagcacaaggcaccatttaattaggggcaccaaaattatt 35122071  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 10669059 - 10668998
Alignment:
Q  276 tgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||| ||||  |||||||  ||||||||||||||  ||||||||||||||||||||||||    
T  10669059 tgagggtgggcgggaggggcagcagtccagggcaccatttttttaggggcaccaaaattatt 10668998  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 13229255 - 13229316
Alignment:
Q  276 tgagggcgggctcgaggggcgacagtccagggcaccgcttttttaggggcaccaaaattatt 337  Q
    |||||||||||  |||||||| ||| ||| ||||||  |||||||| |||||||||||||||    
T  13229255 tgagggcgggcaggaggggcggcagcccaaggcaccatttttttagaggcaccaaaattatt 13229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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