View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_high_19 (Length: 321)
Name: NF12924_high_19
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 27227855 - 27227551
Alignment:
| Q |
1 |
acataacacgtaaatcatcacacattctggggagattaactcggaacctcttcccaaatccacaatccccattgaacttcttcctaatgactaacaagct |
100 |
Q |
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| T |
27227855 |
acataacatgtaaatcatcacacattctggggagattaactcggaacatcttcccaaatccacaatccccattgaatttcttcctaatgactaacaagct |
27227756 |
T |
|
| Q |
101 |
tctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttcatgatttccaaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27227755 |
tctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttcatga-ttccaaacc |
27227657 |
T |
|
| Q |
201 |
gtaaccaaaaaatccaaatacacagtcggtcctgtttggataaatcactttagtaagcgcttttgaaacaagtgtttatgtaatataagctttaatctgt |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
27227656 |
gtaaccaaaaaatccaaatacacagttggtcctgtttggataaatcactttagtaagcgcttttgaaacaagtgtttatgtaatataatctataatctgt |
27227557 |
T |
|
| Q |
301 |
ttttaa |
306 |
Q |
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|||||| |
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| T |
27227556 |
ttttaa |
27227551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 5076231 - 5076141
Alignment:
| Q |
98 |
gcttctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttcat |
188 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||| ||| ||||||| |
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| T |
5076231 |
gcttctaacactaactgattcgggagcaacactaataaaacattataaaacaagcctaacaaaactaaatactcattattatacagttcat |
5076141 |
T |
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