View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_high_27 (Length: 250)
Name: NF12924_high_27
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 14166753 - 14166519
Alignment:
| Q |
1 |
cgtagcttcaatgatcatgttaagtactatgaaaaggtagatctctcacatttttctgcgatgaatttaattttgctacattgtctaggtaaaagttgta |
100 |
Q |
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| T |
14166753 |
cgtagcttcaatgatcatgttaagtactatgaaaaggtagatctctcacatttttctgcgatgaatttaattttgatacattgtctaggtaaaagttgta |
14166654 |
T |
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| Q |
101 |
cattgaaaacaaatcggaaccattcataaaatgttcttctagagtttaattttgatacactctcgttataaaatgctttaccatgtccacaaaatattgt |
200 |
Q |
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| T |
14166653 |
cattgaaaacaaatcggaaccattcataaaatgttcttctagagtttaattttgatacactctcgttataaaatgctttaccatgtccacaaaatattgt |
14166554 |
T |
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| Q |
201 |
tactacaatgattt-aactttacattttctgatca |
234 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
14166553 |
tactacaatgatttgaactttacattttctgatca |
14166519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 11189310 - 11189277
Alignment:
| Q |
139 |
ctagagtttaattttgatacactctcgttataaa |
172 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
11189310 |
ctagagtttaattttgatacactctcggtataaa |
11189277 |
T |
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