View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_high_34 (Length: 236)
Name: NF12924_high_34
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21271052 - 21270832
Alignment:
| Q |
1 |
ataagaagacactataatctaaactttatttgaaaagtaagtaaagcataaacaaccccttttgagaaagaattctaacattttcattactgttataagc |
100 |
Q |
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| T |
21271052 |
ataagaagacactataatctaaactttatttgaaaagtaagtaaagcataaacaaccccttttgaggcagaaatctaacattttcattactgttataagc |
21270953 |
T |
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| Q |
101 |
taataaaaacaaattcttaaattggtattttcatatgatatcaactgtattggttaatttaattgcatcagaaagaaccctttacaaagcataaaacaac |
200 |
Q |
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| T |
21270952 |
taataaaaacaaattcttaaattggtattttcatatgatatcaactgtattggttaatttaattgcatcagaaagaaccctttacaaagcataaaacaac |
21270853 |
T |
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| Q |
201 |
attttagaaaaagggaaaaga |
221 |
Q |
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| T |
21270852 |
attttagaaaaagggaaaaga |
21270832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 21270286 - 21270228
Alignment:
| Q |
68 |
aagaattctaacattttcattactgttataagctaataaaaacaaattcttaaattggt |
126 |
Q |
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||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
21270286 |
aagaatttgaacatattcattactcatataagctaagaaaaacaaattcttaaattggt |
21270228 |
T |
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